Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230338960 . G A CCDS1582.1:NM_004481.3:c.298Gcc>Acc_NP_004472.1:p.100A>T Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ALA A:100 A:100 56.0 0.487 T -67.1 -48.5 NA NA NA
ALA B:100 B:100 55.0 0.478 T -68.4 -47.3 NA NA NA
ALA C:100 C:100 49.0 0.426 T -67.8 -48.3 49.0 0.426 0.0 HOH
 7.911
 C
 O
ALA D:100 D:100 62.0 0.539 T -67.6 -48.2 NA NA NA
ALA E:100 E:100 48.0 0.417 T -68.0 -48.7 NA NA NA
ALA F:100 F:100 47.0 0.409 T -69.1 -49.2 47.0 0.409 0.0
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ALA A:100 A:100 49.0 0.426 T -64.0 -46.9 NA NA NA
ALA B:100 B:100 49.0 0.426 T -64.9 -47.9 49.0 0.426 0.0 HOH
 8.993
 N
 O
ALA C:100 C:100 51.0 0.443 T -66.5 -48.2 NA NA NA
ALA D:100 D:100 54.0 0.47 T -67.0 -47.3 NA NA NA
ALA E:100 E:100 49.0 0.426 T -67.8 -46.5 NA NA NA
ALA F:100 F:100 49.0 0.426 T -66.8 -46.8 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ALA A:100 A:100 46.0 0.4 T -61.8 -60.4 46.0 0.4 0.0
ALA B:100 B:100 49.0 0.426 T -62.4 -60.0 49.0 0.426 0.0
ALA D:100 D:100 44.0 0.383 T -64.6 -60.5 NA NA NA
ALA E:100 E:100 37.0 0.322 T -61.8 -59.9 NA NA NA
ALA F:100 F:100 31.0 0.27 -72.5 -135.8 NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ALA A:100 A:100 72.0 0.626 T -70.5 -38.7 72.0 0.626 0.0 EDO
HOH
 8.054
3.458
 O
N
 O2
O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ALA A:100 A:100 70.0 0.609 T -63.9 -44.7 70.0 0.609 0.0 SO4
SO4
HOH
 9.857
7.111
3.323
 N
O
CB
 O4
O1
O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ALA A:100 A:100 55.0 0.478 T -55.8 -48.0 55.0 0.478 0.0 SO4
SO4
HOH
 8.232
7.718
2.682
 O
CB
O
 O4
O1
O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 ALA A:100 A:100 51.0 0.443 T -57.2 -53.3 NA NA NA
ALA B:100 B:100 75.0 0.652 T -64.7 -29.2 NA NA NA
ALA C:100 C:100 59.0 0.513 T -59.7 -43.2 59.0 0.513 0.0 HOH
 3.846
 N
 O
ALA D:100 D:100 58.0 0.504 T -66.3 -58.3 58.0 0.504 0.0 HOH
 6.318
 N
 O
ALA E:100 E:100 52.0 0.452 T -57.8 -49.3 NA NA NA
ALA F:100 F:100 75.0 0.652 T -60.0 -42.5 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 ALA A:100 A:100 56.0 0.487 T -66.5 -40.0 NA NA NA
ALA B:100 B:100 57.0 0.496 T -66.6 -40.3 NA NA NA
ALA C:100 C:100 54.0 0.47 T -66.0 -41.3 NA NA NA
ALA D:100 D:100 56.0 0.487 T -65.7 -40.2 NA NA NA
ALA E:100 E:100 56.0 0.487 T -66.0 -40.7 56.0 0.487 0.0 HOH
 8.914
 C
 O
ALA F:100 F:100 58.0 0.504 T -66.8 -40.1 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 ALA C:100 C:100 73.0 0.635 T -63.0 -60.7 NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 ALA A:100 A:100 51.0 0.443 T -82.7 -70.6 51.0 0.443 0.0 HOH
 5.290
 N
 O
ALA B:100 B:100 48.0 0.417 T -76.0 -45.2 NA NA NA
ALA C:100 C:100 64.0 0.557 H -76.0 -38.8 64.0 0.557 0.0
ALA D:100 D:100 54.0 0.47 S -69.1 -57.3 NA NA NA
ALA E:100 E:100 50.0 0.435 H -72.1 -36.3 NA NA NA
ALA F:100 F:100 53.0 0.461 S -120.4 -56.4 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ALA A:30 A:100 57.0 0.496 T -52.4 -50.2 57.0 0.496 0.0 HOH
 2.953
 O
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ALA A:30 A:100 85.0 0.739 G -40.2 -78.6 85.0 0.739 0.0
ALA B:30 NA:NA DO NA DO DO DO NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 ALA A:57 A:100 30.0 0.261 T -64.7 -46.6 30.0 0.261 0.0 HOH
 2.921
 O
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 ALA A:32 NA:NA DO NA DO DO DO NA NA NA
ALA B:32 NA:NA DO NA DO DO DO NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 ALA A:100 A:100 53.0 0.461 T -58.0 -51.0