Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230339000 . G A CCDS1582.1:NM_004481.3:c.338cGa>cAa_NP_004472.1:p.113R>Q Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:113 A:113 165.0 0.733 -62.9 145.6 NA NA NA
ARG B:113 B:113 170.0 0.756 -62.9 146.5 NA NA NA
ARG C:113 C:113 128.0 0.569 -62.0 146.2 128.0 0.569 0.0 HOH
 3.897
 CA
 O
ARG D:113 D:113 135.0 0.6 -62.4 144.8 NA NA NA
ARG E:113 E:113 138.0 0.613 -61.7 146.5 NA NA NA
ARG F:113 F:113 180.0 0.8 -60.9 147.1 180.0 0.8 0.0 HOH
 5.740
 O
 O
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:113 A:113 144.0 0.64 -63.8 147.6 NA NA NA
ARG B:113 B:113 130.0 0.578 -63.4 148.9 130.0 0.578 0.0 EDO
HOH
 5.251
2.635
 O
N
 O1
O
ARG C:113 C:113 139.0 0.618 -64.8 145.0 NA NA NA
ARG D:113 D:113 129.0 0.573 -61.9 142.1 NA NA NA
ARG E:113 E:113 138.0 0.613 -64.9 146.7 NA NA NA
ARG F:113 F:113 130.0 0.578 -64.2 147.1 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:113 A:113 131.0 0.582 -66.6 141.6 131.0 0.582 0.0
ARG B:113 B:113 128.0 0.569 -65.4 140.5 128.0 0.569 0.0
ARG D:113 D:113 127.0 0.564 -67.7 140.8 NA NA NA
ARG E:113 E:113 128.0 0.569 -66.5 140.6 NA NA NA
ARG F:113 F:113 166.0 0.738 -64.2 140.2 NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:113 A:113 139.0 0.618 -75.7 157.7 139.0 0.618 0.0 SO4
SO4
SO4
HOH
 9.303
3.703
7.447
2.891
 O
CG
NH2
NH1
 O1
O1
O4
O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:113 A:113 137.0 0.609 -71.9 151.4 137.0 0.609 0.0 SO4
HOH
 5.485
2.604
 NH2
NH2
 O1
O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:113 A:113 136.0 0.604 -64.0 149.1 136.0 0.604 0.0 HOH
 2.286
 CD
 O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 ARG A:113 A:113 136.0 0.604 -67.1 145.8 NA NA NA
ARG B:113 B:113 130.0 0.578 -69.1 151.0 NA NA NA
ARG C:113 C:113 128.0 0.569 -71.3 147.5 128.0 0.569 0.0 HOH
 2.736
 N
 O
ARG D:113 D:113 132.0 0.587 -65.9 151.4 132.0 0.587 0.0 HOH
 2.586
 N
 O
ARG E:113 E:113 154.0 0.684 -73.4 151.7 NA NA NA
ARG F:113 F:113 134.0 0.596 -58.6 140.3 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 ARG A:113 A:113 139.0 0.618 -63.7 148.1 NA NA NA
ARG B:113 B:113 159.0 0.707 -64.0 147.3 NA NA NA
ARG C:113 C:113 139.0 0.618 -61.8 147.2 NA NA NA
ARG D:113 D:113 135.0 0.6 -64.6 148.4 NA NA NA
ARG E:113 E:113 132.0 0.587 -62.9 147.0 132.0 0.587 0.0 HOH
 2.749
 NH1
 O
ARG F:113 F:113 135.0 0.6 -63.8 148.3 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 ARG C:113 C:113 125.0 0.556 -65.3 141.6 NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 ARG A:113 A:113 140.0 0.622 -69.2 155.7 140.0 0.622 0.0 HOH
 3.149
 NH2
 O
ARG B:113 B:113 159.0 0.707 -67.7 155.5 NA NA NA
ARG C:113 C:113 132.0 0.587 -64.5 154.0 132.0 0.587 0.0 HOH
 3.651
 N
 O
ARG D:113 D:113 125.0 0.556 -60.5 154.1 NA NA NA
ARG E:113 E:113 118.0 0.524 -69.2 156.5 NA NA NA
ARG F:113 F:113 58.0 NA -63.3 153.6 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ARG A:43 A:113 169.0 0.751 -76.5 152.3 169.0 0.751 0.0 HOH
 2.816
 NE
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ARG A:43 A:113 136.0 0.604 -82.5 153.5 136.0 0.604 0.0
ARG B:43 B:113 143.0 0.636 -85.6 139.5 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 ARG A:70 A:113 163.0 0.724 -74.3 153.0 163.0 0.724 0.0 HOH
 2.786
 NH2
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 ARG A:45 A:113 129.0 0.573 -74.7 156.2 129.0 0.573 0.0 HOH
 4.508
 N
 O
ARG B:45 B:113 129.0 0.573 -73.7 155.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 ARG A:113 A:113 163.0 0.724 -59.9 142.7