Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230371767 . C A CCDS1582.1:NM_004481.3:c.382Cgg>Agg_NP_004472.1:p.128R>R Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:128 A:128 171.0 0.76 H -92.5 -31.0 NA NA NA
ARG B:128 B:128 143.0 0.636 H -91.7 -14.8 NA NA NA
ARG C:128 C:128 180.0 0.8 T -125.2 -20.0 180.0 0.8 0.0 HOH
 8.271
 NH1
 O
ARG D:128 D:128 190.0 0.844 H -93.2 -30.7 NA NA NA
ARG E:128 E:128 165.0 0.733 H -91.8 -31.2 NA NA NA
ARG F:128 F:128 165.0 0.733 H -93.2 -29.7 165.0 0.733 0.0 HOH
 4.831
 N
 O
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:128 A:128 183.0 0.813 H -91.0 -27.0 NA NA NA
ARG B:128 B:128 185.0 0.822 H -91.3 -28.2 185.0 0.822 0.0 HOH
 7.731
 N
 O
ARG C:128 C:128 183.0 0.813 H -89.8 -26.3 NA NA NA
ARG D:128 D:128 184.0 0.818 H -88.1 -28.3 NA NA NA
ARG E:128 E:128 168.0 0.747 H -89.8 -28.5 NA NA NA
ARG F:128 F:128 175.0 0.778 -133.9 119.9 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:128 A:128 187.0 0.831 S -103.8 58.2 187.0 0.831 0.0
ARG B:128 B:128 183.0 0.813 S -93.5 63.5 183.0 0.813 0.0
ARG D:128 D:128 206.0 0.916 H -87.8 -43.1 NA NA NA
ARG E:128 E:128 193.0 0.858 S -103.7 58.4 NA NA NA
ARG F:128 F:128 189.0 0.84 S -103.2 58.6 NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:128 A:128 182.0 0.809 G -102.9 35.4 182.0 0.809 0.0 HOH
 2.957
 NE
 O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:128 A:128 212.0 0.942 G -98.5 19.4 212.0 0.942 0.0 HOH
 2.856
 CZ
 O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:128 A:128 196.0 0.871 G -103.5 31.1 196.0 0.871 0.0 HOH
 3.060
 NE
 O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 ARG A:128 A:128 167.0 0.742 H -85.9 -27.4 NA NA NA
ARG B:128 B:128 174.0 0.773 G -103.1 -7.5 NA NA NA
ARG C:128 C:128 185.0 0.822 S -86.4 -107.2 185.0 0.822 0.0 HOH
 2.908
 O
 O
ARG D:128 D:128 175.0 0.778 H -88.8 -5.8 175.0 0.778 0.0 HOH
 2.980
 CD
 O
ARG E:128 E:128 161.0 0.716 G -100.1 -11.8 NA NA NA
ARG F:128 F:128 198.0 0.88 H -87.3 -52.0 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 ARG A:128 A:128 171.0 0.76 H -93.6 -25.6 NA NA NA
ARG B:128 B:128 167.0 0.742 H -93.2 -28.9 NA NA NA
ARG C:128 C:128 170.0 0.756 S -111.2 96.0 NA NA NA
ARG D:128 D:128 165.0 0.733 H -94.1 -25.6 NA NA NA
ARG E:128 E:128 182.0 0.809 H -93.1 -25.2 182.0 0.809 0.0 HOH
 4.009
 O
 O
ARG F:128 F:128 206.0 0.916 H -93.1 -26.4 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 ARG C:128 C:128 230.0 1.0 G -155.7 119.7 NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 ARG A:128 A:128 205.0 0.911 S 105.9 68.8 205.0 0.911 0.0 HOH
 3.955
 NH2
 O
ARG B:128 B:128 191.0 0.849 S -102.5 67.9 NA NA NA
ARG C:128 C:128 97.0 NA T -110.2 73.5 97.0 NA NA
ARG D:128 D:128 85.0 NA H -96.2 -57.3 NA NA NA
ARG E:128 NA:NA DO NA DO DO DO NA NA NA
ARG F:128 F:128 170.0 0.756 T -99.4 -57.7 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ARG A:58 A:128 216.0 0.96 G -112.4 -11.9 216.0 0.96 0.0 HOH
 5.777
 N
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ARG A:58 A:128 170.0 0.756 T -99.4 70.8 170.0 0.756 0.0
ARG B:58 B:128 168.0 0.747 T -123.7 51.1 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 ARG A:85 A:128 92.0 NA S -95.7 64.0 92.0 NA NA HOH
 5.143
 N
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 ARG A:60 A:128 201.0 0.893 T -128.8 75.6 201.0 0.893 0.0 HOH
 8.960
 C
 O
ARG B:60 B:128 209.0 0.929 G -143.3 83.3 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 ARG A:128 A:128 208.0 0.924 T -90.3 -11.3