Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230372166 . C A CCDS1582.1:NM_004481.3:c.541Cct>Act_NP_004472.1:p.181P>T Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 PRO A:181 A:181 59.0 0.407 T -64.3 -15.4 NA NA NA
PRO B:181 B:181 59.0 0.407 T -63.4 -15.9 NA NA NA
PRO C:181 C:181 58.0 0.4 T -65.0 -15.3 58.0 0.4 0.0 HOH
 2.822
 O
 O
PRO D:181 D:181 57.0 0.393 T -60.7 -16.1 NA NA NA
PRO E:181 E:181 58.0 0.4 T -65.0 -15.5 NA NA NA
PRO F:181 F:181 59.0 0.407 T -61.7 -17.2 59.0 0.407 0.0
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 PRO A:181 A:181 63.0 0.434 T -64.6 -19.0 NA NA NA
PRO B:181 B:181 63.0 0.434 T -58.7 -20.7 63.0 0.434 0.0 HOH
 3.230
 O
 O
PRO C:181 C:181 63.0 0.434 T -58.9 -20.7 NA NA NA
PRO D:181 D:181 65.0 0.448 T -60.7 -20.5 NA NA NA
PRO E:181 E:181 63.0 0.434 T -60.7 -19.2 NA NA NA
PRO F:181 F:181 62.0 0.428 T -60.5 -19.5 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 PRO A:181 A:181 53.0 0.366 T -65.3 -13.9 53.0 0.366 0.0
PRO B:181 B:181 56.0 0.386 T -64.4 -15.2 56.0 0.386 0.0
PRO D:181 D:181 54.0 0.372 T -65.3 -14.7 NA NA NA
PRO E:181 E:181 51.0 0.352 T -69.1 -12.4 NA NA NA
PRO F:181 F:181 45.0 0.31 T -65.3 -15.1 NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 PRO A:181 A:181 57.0 0.393 T -67.4 -13.8 57.0 0.393 0.0 HOH
 2.884
 O
 O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 PRO A:181 A:181 57.0 0.393 T -59.5 -19.9 57.0 0.393 0.0 SO4
HOH
 4.294
2.798
 CG
O
 O3
O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 PRO A:181 A:181 53.0 0.366 T -63.4 -21.6 53.0 0.366 0.0 HOH
 2.715
 O
 O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 PRO A:181 A:181 55.0 0.379 T -64.9 -20.7 NA NA NA
PRO B:181 B:181 57.0 0.393 T -59.8 -17.2 NA NA NA
PRO C:181 C:181 58.0 0.4 T -67.1 -14.7 58.0 0.4 0.0 HOH
 2.742
 O
 O
PRO D:181 D:181 54.0 0.372 T -52.3 -23.6 54.0 0.372 0.0 HOH
 3.002
 O
 O
PRO E:181 E:181 59.0 0.407 T -65.1 -9.4 NA NA NA
PRO F:181 F:181 60.0 0.414 T -66.5 -15.7 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 PRO A:181 A:181 60.0 0.414 T -61.2 -16.7 NA NA NA
PRO B:181 B:181 60.0 0.414 T -60.9 -16.9 NA NA NA
PRO C:181 C:181 61.0 0.421 T -60.9 -16.8 NA NA NA
PRO D:181 D:181 60.0 0.414 T -60.6 -16.7 NA NA NA
PRO E:181 E:181 60.0 0.414 T -60.9 -17.1 60.0 0.414 0.0 HOH
 3.157
 O
 O
PRO F:181 F:181 57.0 0.393 T -60.2 -18.1 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 PRO C:181 C:181 54.0 0.372 T -66.4 -14.5 NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 PRO A:181 A:181 54.0 0.372 T -57.2 -22.4 54.0 0.372 0.0 HOH
 4.545
 CD
 O
PRO B:181 B:181 50.0 0.345 T -56.7 -23.1 NA NA NA
PRO C:181 C:181 57.0 0.393 T -58.5 -21.1 57.0 0.393 0.0
PRO D:181 D:181 55.0 0.379 T -57.1 -25.0 NA NA NA
PRO E:181 E:181 56.0 0.386 T -56.2 -15.5 NA NA NA
PRO F:181 F:181 52.0 0.359 T -58.6 -11.2 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 PRO A:111 A:181 58.0 0.4 T -58.3 -20.6 58.0 0.4 0.0 HOH
 2.745
 O
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 PRO A:111 A:181 60.0 0.414 T -47.8 -36.2 60.0 0.414 0.0
PRO B:111 B:181 59.0 0.407 T -51.5 -25.0 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 PRO A:138 A:181 60.0 0.414 T -67.5 -17.2 60.0 0.414 0.0 HOH
 2.679
 O
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 PRO A:113 A:181 57.0 0.393 T -59.2 -23.3 57.0 0.393 0.0 HOH
 7.209
 O
 O
PRO B:113 B:181 58.0 0.4 T -57.4 -24.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 PRO A:181 A:181 56.0 0.386 T -60.8 -24.9