Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230372420 . C A CCDS1582.1:NM_004481.3:c.556Ctc>Atc_NP_004472.1:p.186L>I Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 LEU A:186 A:186 60.0 0.353 G -59.6 -28.0 NA NA NA
LEU B:186 B:186 42.0 0.247 G -60.5 -29.2 NA NA NA
LEU C:186 C:186 63.0 0.371 G -59.9 -30.2 63.0 0.371 0.0 HOH
 6.525
 O
 O
LEU D:186 D:186 42.0 0.247 G -60.8 -29.2 NA NA NA
LEU E:186 E:186 43.0 0.253 G -58.9 -29.8 NA NA NA
LEU F:186 F:186 43.0 0.253 G -61.1 -28.5 43.0 0.253 0.0 HOH
 6.759
 O
 O
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 LEU A:186 A:186 41.0 0.241 G -62.9 -29.7 NA NA NA
LEU B:186 B:186 39.0 0.229 G -62.3 -27.8 39.0 0.229 0.0 HOH
 3.834
 CD2
 O
LEU C:186 C:186 40.0 0.235 G -63.2 -28.5 NA NA NA
LEU D:186 D:186 40.0 0.235 G -63.2 -28.9 NA NA NA
LEU E:186 E:186 41.0 0.241 G -61.5 -29.6 NA NA NA
LEU F:186 F:186 35.0 0.206 G -61.7 -30.4 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 LEU A:186 A:186 40.0 0.235 G -57.1 -38.8 40.0 0.235 0.0
LEU B:186 B:186 39.0 0.229 G -57.9 -37.1 39.0 0.229 0.0
LEU D:186 D:186 39.0 0.229 G -58.3 -38.1 NA NA NA
LEU E:186 E:186 40.0 0.235 G -58.0 -38.7 NA NA NA
LEU F:186 F:186 40.0 0.235 G -58.6 -38.1 NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 LEU A:186 A:186 58.0 0.341 G -56.4 -28.7 58.0 0.341 0.0 SO4
HOH
 6.637
2.724
 CD1
O
 O4
O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 LEU A:186 A:186 57.0 0.335 G -68.4 -25.7 57.0 0.335 0.0 HOH
 2.782
 O
 O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 LEU A:186 A:186 61.0 0.359 G -65.6 -28.3 61.0 0.359 0.0 HOH
 3.671
 CD1
 O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 LEU A:186 A:186 44.0 0.259 G -62.3 -28.0 NA NA NA
LEU B:186 B:186 43.0 0.253 G -61.8 -30.6 NA NA NA
LEU C:186 C:186 59.0 0.347 H -67.2 -29.9 59.0 0.347 0.0 HOH
 3.485
 CD1
 O
LEU D:186 D:186 43.0 0.253 G -61.6 -29.2 43.0 0.253 0.0 HOH
 5.432
 CD1
 O
LEU E:186 E:186 46.0 0.271 G -65.2 -19.7 NA NA NA
LEU F:186 F:186 42.0 0.247 G -59.4 -35.0 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 LEU A:186 A:186 43.0 0.253 H -63.2 -31.8 NA NA NA
LEU B:186 B:186 41.0 0.241 H -62.8 -32.3 NA NA NA
LEU C:186 C:186 54.0 0.318 H -62.9 -32.1 NA NA NA
LEU D:186 D:186 56.0 0.329 H -62.9 -31.9 NA NA NA
LEU E:186 E:186 43.0 0.253 H -63.2 -32.0 43.0 0.253 0.0 HOH
 3.844
 CD1
 O
LEU F:186 F:186 41.0 0.241 H -63.4 -31.9 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 LEU C:186 C:186 39.0 0.229 G -59.1 -38.3 NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 LEU A:186 A:186 48.0 0.282 G -59.3 -30.1 48.0 0.282 0.0 HOH
 4.087
 CD1
 O
LEU B:186 B:186 64.0 0.376 G -62.4 -28.8 NA NA NA
LEU C:186 C:186 58.0 0.341 G -59.0 -29.7 58.0 0.341 0.0 HOH
 9.292
 CD1
 O
LEU D:186 D:186 56.0 0.329 G -61.1 -30.5 NA NA NA
LEU E:186 E:186 59.0 0.347 G -63.7 -17.2 NA NA NA
LEU F:186 F:186 77.0 NA T -68.1 -6.9 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 LEU A:116 A:186 60.0 0.353 G -65.5 -27.6 60.0 0.353 0.0 HOH
 2.619
 O
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 LEU A:116 A:186 43.0 0.253 T -52.0 -16.4 43.0 0.253 0.0
LEU B:116 B:186 29.0 0.171 T -53.0 -19.0 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 LEU A:143 A:186 63.0 0.371 G -65.3 -30.5 63.0 0.371 0.0 HOH
 3.757
 CD1
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 LEU A:118 A:186 37.0 0.218 G -59.9 -27.5 37.0 0.218 0.0 HOH
 4.095
 CD2
 O
LEU B:118 B:186 37.0 0.218 G -59.1 -26.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 LEU A:186 A:186 58.0 0.341 T -65.3 -39.0