Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230372462 . C A CCDS1582.1:NM_004481.3:c.598Cga>Aga_NP_004472.1:p.200R>R Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:200 A:200 171.0 0.76 S -145.0 168.9 NA NA NA
ARG B:200 B:200 174.0 0.773 S -146.4 171.8 NA NA NA
ARG C:200 C:200 171.0 0.76 S -147.3 171.2 171.0 0.76 0.0 UDP
HOH
 8.518
5.197
 O
N
 O4
O
ARG D:200 D:200 167.0 0.742 S -147.9 171.7 NA NA NA
ARG E:200 E:200 169.0 0.751 S -143.8 170.7 NA NA NA
ARG F:200 F:200 171.0 0.76 S -146.7 171.9 171.0 0.76 0.0 UD2
 8.488
 O
 N3
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:200 A:200 163.0 0.724 S -140.1 166.3 NA NA NA
ARG B:200 B:200 156.0 0.693 S -141.0 167.2 156.0 0.693 0.0 HWU
HOH
 8.589
7.136
 O
NH1
 O4
O
ARG C:200 C:200 164.0 0.729 S -141.1 153.1 NA NA NA
ARG D:200 D:200 157.0 0.698 S -142.0 169.1 NA NA NA
ARG E:200 E:200 161.0 0.716 S -141.2 167.6 NA NA NA
ARG F:200 F:200 159.0 0.707 S -142.2 165.9 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:200 A:200 163.0 0.724 S -150.8 157.0 163.0 0.724 0.0 UDP
 8.270
 O
 O4
ARG B:200 B:200 161.0 0.716 S -150.4 157.1 161.0 0.716 0.0 UDP
 7.976
 O
 O4
ARG D:200 D:200 164.0 0.729 S -162.2 131.9 NA NA NA
ARG E:200 E:200 162.0 0.72 S -150.8 156.6 NA NA NA
ARG F:200 F:200 162.0 0.72 S -149.9 156.6 NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:200 A:200 143.0 0.636 S -162.6 166.1 143.0 0.636 0.0 HOH
 2.981
 NH1
 O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:200 A:200 143.0 0.636 S -159.0 162.7 143.0 0.636 0.0 SO4
SO4
SO4
HOH
 6.059
4.423
7.341
3.064
 N
N
C
NH1
 O4
O2
O3
O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:200 A:200 149.0 0.662 S -157.7 169.3 149.0 0.662 0.0 UDP
SO4
SO4
HOH
 8.362
9.905
5.686
2.947
 O
C
C
NH1
 O4
O3
O1
O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 ARG A:200 A:200 139.0 0.618 S -149.1 168.0 NA NA NA
ARG B:200 B:200 150.0 0.667 S -140.3 167.1 NA NA NA
ARG C:200 C:200 147.0 0.653 S -141.2 170.4 147.0 0.653 0.0 UDP
HOH
 8.127
4.609
 O
CB
 N3
O
ARG D:200 D:200 153.0 0.68 S -101.8 170.8 153.0 0.68 0.0 UDP
HOH
 8.307
4.540
 O
NH1
 N3
O
ARG E:200 E:200 165.0 0.733 S -146.7 164.2 NA NA NA
ARG F:200 F:200 175.0 0.778 S -139.1 170.2 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 ARG A:200 A:200 161.0 0.716 S -145.4 167.1 NA NA NA
ARG B:200 B:200 168.0 0.747 S -144.9 167.2 NA NA NA
ARG C:200 C:200 170.0 0.756 S -144.7 167.4 NA NA NA
ARG D:200 D:200 180.0 0.8 S -145.6 165.8 NA NA NA
ARG E:200 E:200 167.0 0.742 S -144.8 167.1 167.0 0.742 0.0 UDP
HOH
 8.453
3.903
 O
N
 O4
O
ARG F:200 F:200 168.0 0.747 S -145.4 167.0 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 ARG C:200 C:200 154.0 0.684 S -155.8 158.8 NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 ARG A:200 A:200 154.0 0.684 S -126.1 175.3 154.0 0.684 0.0 LR7
HOH
 8.877
3.903
 O
N
 N3
O
ARG B:200 B:200 174.0 0.773 S -121.8 169.9 NA NA NA
ARG C:200 C:200 155.0 0.689 S -125.9 173.0 155.0 0.689 0.0 LR7
HOH
 8.322
7.826
 O
NH1
 O4
O
ARG D:200 D:200 50.0 NA S -130.0 174.3 NA NA NA
ARG E:200 E:200 137.0 0.609 S -145.0 -173.6 NA NA NA
ARG F:200 F:200 70.0 NA S -101.5 173.4 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ARG A:130 A:200 163.0 0.724 S -152.2 166.8 163.0 0.724 0.0 UDP
HOH
 8.527
3.250
 O
N
 O4
O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ARG A:130 A:200 141.0 0.627 S -153.5 163.3 141.0 0.627 0.0 UDP
 8.315
 O
 N3
ARG B:130 B:200 153.0 0.68 S -115.9 162.9 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 ARG A:157 A:200 174.0 0.773 S -148.3 166.6 174.0 0.773 0.0 UDP
HOH
 8.408
3.585
 O
CB
 O4
O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 ARG A:132 A:200 144.0 0.64 S -158.6 164.6 144.0 0.64 0.0 UD2
HOH
 8.422
4.363
 O
CD
 N3
O
ARG B:132 B:200 157.0 0.698 S -159.4 165.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 ARG A:200 A:200 166.0 0.738 S -151.9 165.2