Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230379067 . G A CCDS1582.1:NM_004481.3:c.623cGg>cAg_NP_004472.1:p.208R>Q Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:208 A:208 11.0 0.049 H -65.6 -37.0 NA NA NA
ARG B:208 B:208 10.0 0.044 H -65.7 -36.6 NA NA NA
ARG C:208 C:208 12.0 0.053 H -64.2 -37.4 12.0 0.053 0.0 MN
UDP
EDO
NGA
HOH
 7.366
4.585
9.654
3.242
3.488
 NH2
NH2
NH2
NH2
NE
 MN
C5'
C1
O3
O
ARG D:208 D:208 10.0 0.044 H -64.9 -37.2 NA NA NA
ARG E:208 E:208 12.0 0.053 H -67.3 -35.2 NA NA NA
ARG F:208 F:208 12.0 0.053 H -65.6 -38.0 12.0 0.053 0.0 MN
UD2
HOH
 7.396
3.068
8.455
 NH2
NH2
O
 MN
O3'
O
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:208 A:208 11.0 0.049 H -60.9 -42.3 NA NA NA
ARG B:208 B:208 14.0 0.062 H -61.6 -41.5 14.0 0.062 0.0 MN
HWU
EDO
HOH
 7.599
2.704
9.327
2.911
 NH2
NH2
NH2
NE
 MN
O3'
O2
O
ARG C:208 C:208 12.0 0.053 H -63.6 -39.6 NA NA NA
ARG D:208 D:208 12.0 0.053 H -62.7 -37.8 NA NA NA
ARG E:208 E:208 13.0 0.058 H -63.7 -40.4 NA NA NA
ARG F:208 F:208 11.0 0.049 H -61.0 -39.0 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:208 A:208 1.0 0.004 H -60.9 -44.6 1.0 0.004 0.0 MN
UDP
 7.758
5.409
 NH2
NH2
 MN
C4'
ARG B:208 B:208 1.0 0.004 H -59.7 -42.8 1.0 0.004 0.0 MN
UDP
 7.828
5.368
 NH2
NH2
 MN
C4'
ARG D:208 D:208 2.0 0.009 H -61.2 -43.2 NA NA NA
ARG E:208 E:208 1.0 0.004 H -60.3 -44.5 NA NA NA
ARG F:208 F:208 5.0 0.022 H -60.2 -44.2 NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:208 A:208 1.0 0.004 H -63.7 -36.7 1.0 0.004 0.0 SO4
EDO
HOH
 9.517
9.283
2.895
 NH2
O
NH2
 O4
O1
O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:208 A:208 0.0 0.0 H -66.4 -36.7 0.0 0.0 0.0 A2G
HOH
 7.529
2.926
 NH2
NE
 C8
O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:208 A:208 5.0 0.022 H -63.8 -41.2 5.0 0.022 0.0 UDP
MN
SO4
HOH
 5.202
7.793
9.321
2.887
 NH2
NH2
O
NE
 C4'
MN
O4
O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 ARG A:208 A:208 0.0 0.0 H -63.8 -33.3 NA NA NA
ARG B:208 B:208 0.0 0.0 H -64.4 -39.7 NA NA NA
ARG C:208 C:208 1.0 0.004 H -62.2 -36.1 1.0 0.004 0.0 UDP
MN
HOH
 5.999
7.493
2.838
 N
NH2
NE
 O4
MN
O
ARG D:208 D:208 1.0 0.004 H -60.4 -40.2 1.0 0.004 0.0 UDP
MN
HOH
 5.906
7.614
2.956
 N
NH2
NE
 O4
MN
O
ARG E:208 E:208 0.0 0.0 H -67.4 -32.2 NA NA NA
ARG F:208 F:208 0.0 0.0 H -62.4 -42.1 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 ARG A:208 A:208 7.0 0.031 H -65.9 -39.5 NA NA NA
ARG B:208 B:208 8.0 0.036 H -65.4 -40.2 NA NA NA
ARG C:208 C:208 7.0 0.031 H -65.1 -40.3 NA NA NA
ARG D:208 D:208 7.0 0.031 H -65.9 -40.0 NA NA NA
ARG E:208 E:208 8.0 0.036 H -65.1 -40.4 8.0 0.036 0.0 MN
UDP
EDO
HOH
 7.261
4.372
4.259
2.836
 NH1
NH1
NH1
NH1
 MN
C5'
O1
O
ARG F:208 F:208 3.0 0.013 H -64.7 -40.6 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 ARG C:208 C:208 1.0 0.004 H -58.5 -44.7 NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 ARG A:208 A:208 5.0 0.022 H -59.9 -38.9 5.0 0.022 0.0 MN
LR7
HOH
 7.168
2.938
2.916
 NH2
NH2
NH1
 MN
O3'
O
ARG B:208 B:208 2.0 0.009 H -60.6 -39.1 NA NA NA
ARG C:208 C:208 8.0 0.036 H -60.3 -38.7 8.0 0.036 0.0 MN
LR7
HOH
 7.199
3.153
3.409
 NH2
NH2
NE
 MN
O3'
O
ARG D:208 D:208 5.0 0.022 H -57.5 -40.2 NA NA NA
ARG E:208 E:208 3.0 0.013 H -60.3 -38.3 NA NA NA
ARG F:208 F:208 2.0 0.009 H -58.8 -39.8 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ARG A:138 A:208 11.0 0.049 H -65.6 -37.7 11.0 0.049 0.0 MN
UDP
HOH
 7.287
4.379
2.828
 NH1
NH1
NH1
 MN
C5'
O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ARG A:138 A:208 1.0 0.004 H -66.0 -33.0 1.0 0.004 0.0 MN
UDP
 7.067
5.631
 NH1
NH1
 MN
O1A
ARG B:138 B:208 0.0 0.0 H -66.2 -39.0 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 ARG A:165 A:208 3.0 0.013 H -65.3 -37.2 3.0 0.013 0.0 UDP
MN
HOH
 5.037
7.454
3.048
 NH1
NH1
NE
 C4'
MN
O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 ARG A:140 A:208 1.0 0.004 H -59.8 -37.5 1.0 0.004 0.0 MN
UD2
HOH
 7.439
3.818
6.526
 NH1
NH1
NH1
 MN
O3'
O
ARG B:140 B:208 2.0 0.009 H -59.4 -37.6 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 ARG A:208 A:208 1.0 0.004 H -63.2 -41.6