Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230379073 . G A CCDS1582.1:NM_004481.3:c.629cGg>cAg_NP_004472.1:p.210R>Q Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:210 A:210 104.0 0.462 H -61.8 -41.8 NA NA NA
ARG B:210 B:210 103.0 0.458 H -61.3 -41.6 NA NA NA
ARG C:210 C:210 99.0 0.44 H -60.3 -41.5 99.0 0.44 0.0 HOH
 3.411
 NH1
 O
ARG D:210 D:210 102.0 0.453 H -59.5 -43.2 NA NA NA
ARG E:210 E:210 99.0 0.44 H -60.7 -43.2 NA NA NA
ARG F:210 F:210 100.0 0.444 H -61.6 -42.7 100.0 0.444 0.0 HOH
 6.309
 N
 O
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:210 A:210 101.0 0.449 H -58.6 -41.7 NA NA NA
ARG B:210 B:210 102.0 0.453 H -62.3 -41.0 102.0 0.453 0.0 HOH
 2.485
 NE
 O
ARG C:210 C:210 104.0 0.462 H -59.7 -42.9 NA NA NA
ARG D:210 D:210 101.0 0.449 H -58.7 -42.1 NA NA NA
ARG E:210 E:210 98.0 0.436 H -60.0 -42.4 NA NA NA
ARG F:210 F:210 101.0 0.449 H -60.5 -40.6 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:210 A:210 104.0 0.462 H -55.3 -47.2 104.0 0.462 0.0
ARG B:210 B:210 105.0 0.467 H -54.7 -44.8 105.0 0.467 0.0
ARG D:210 D:210 99.0 0.44 H -52.4 -47.4 NA NA NA
ARG E:210 E:210 106.0 0.471 H -55.0 -47.1 NA NA NA
ARG F:210 F:210 105.0 0.467 H -53.7 -47.3 NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:210 A:210 105.0 0.467 H -61.5 -45.1 105.0 0.467 0.0 EDO
HOH
 2.724
2.750
 NE
O
 O1
O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:210 A:210 101.0 0.449 H -62.4 -45.2 101.0 0.449 0.0 SO4
SO4
HOH
 9.064
2.547
2.739
 NH1
NH1
O
 O4
O3
O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:210 A:210 98.0 0.436 H -58.9 -44.2 98.0 0.436 0.0 SO4
HOH
 2.963
2.742
 NE
O
 O4
O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 ARG A:210 A:210 100.0 0.444 H -57.1 -47.3 NA NA NA
ARG B:210 B:210 99.0 0.44 H -68.9 -35.7 NA NA NA
ARG C:210 C:210 80.0 0.356 H -60.9 -48.0 80.0 0.356 0.0 UDP
HOH
 9.384
2.652
 CB
O
 O4
O
ARG D:210 D:210 100.0 0.444 H -61.7 -42.8 100.0 0.444 0.0 UDP
HOH
 9.491
2.709
 CB
O
 O4
O
ARG E:210 E:210 106.0 0.471 H -55.6 -48.5 NA NA NA
ARG F:210 F:210 103.0 0.458 H -59.1 -42.6 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 ARG A:210 A:210 98.0 0.436 H -58.7 -44.3 NA NA NA
ARG B:210 B:210 102.0 0.453 H -58.2 -43.9 NA NA NA
ARG C:210 C:210 97.0 0.431 H -58.2 -43.7 NA NA NA
ARG D:210 D:210 102.0 0.453 H -57.6 -45.2 NA NA NA
ARG E:210 E:210 99.0 0.44 H -58.4 -44.5 99.0 0.44 0.0 HOH
 2.879
 NE
 O
ARG F:210 F:210 100.0 0.444 H -58.1 -43.9 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 ARG C:210 C:210 94.0 0.418 H -53.9 -46.4 NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 ARG A:210 A:210 103.0 0.458 H -55.3 -55.7 103.0 0.458 0.0 HOH
 3.758
 NH2
 O
ARG B:210 B:210 104.0 0.462 H -56.0 -54.9 NA NA NA
ARG C:210 C:210 94.0 0.418 H -56.4 -54.9 94.0 0.418 0.0 HOH
 4.188
 CG
 O
ARG D:210 D:210 104.0 0.462 H -55.6 -55.9 NA NA NA
ARG E:210 E:210 107.0 0.476 H -56.5 -55.8 NA NA NA
ARG F:210 F:210 107.0 0.476 H -56.8 -54.3 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ARG A:140 A:210 92.0 0.409 H -62.3 -44.3 92.0 0.409 0.0 HOH
 2.921
 NH2
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ARG A:140 A:210 98.0 0.436 H -56.7 -52.1 98.0 0.436 0.0 UDP
 8.825
 CB
 O4
ARG B:140 B:210 102.0 0.453 H -67.6 -53.0 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 ARG A:167 A:210 91.0 0.404 H -59.7 -53.2 91.0 0.404 0.0 HOH
 2.775
 NH2
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 ARG A:142 A:210 102.0 0.453 H -63.5 -46.4 102.0 0.453 0.0 UD2
 9.470
 CB
 O4
ARG B:142 B:210 104.0 0.462 H -62.9 -45.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 ARG A:210 A:210 92.0 0.409 H -57.6 -42.7