Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230379092 . A C CCDS1582.1:NM_004481.3:c.648caA>caC_NP_004472.1:p.216Q>H Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 GLN A:216 A:216 120.0 0.667 -95.9 -20.7 NA NA NA
GLN B:216 B:216 119.0 0.661 -95.6 -23.3 NA NA NA
GLN C:216 C:216 124.0 0.689 -93.7 -22.5 124.0 0.689 0.0 EDO
HOH
 7.049
5.161
 OE1
OE1
 O1
O
GLN D:216 D:216 119.0 0.661 -94.6 -22.8 NA NA NA
GLN E:216 E:216 126.0 0.7 -92.6 -23.9 NA NA NA
GLN F:216 F:216 123.0 0.683 -93.8 -23.4 123.0 0.683 0.0 HOH
 6.680
 O
 O
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 GLN A:216 A:216 126.0 0.7 -101.6 -18.3 NA NA NA
GLN B:216 B:216 127.0 0.706 -101.1 -17.3 127.0 0.706 0.0 EDO
HOH
 6.694
4.077
 O
O
 O2
O
GLN C:216 C:216 126.0 0.7 -98.9 -17.9 NA NA NA
GLN D:216 D:216 124.0 0.689 -102.4 -17.3 NA NA NA
GLN E:216 E:216 127.0 0.706 -97.9 -17.9 NA NA NA
GLN F:216 F:216 124.0 0.689 -99.0 -17.1 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 GLN A:216 A:216 124.0 0.689 -93.5 -26.6 124.0 0.689 0.0
GLN B:216 B:216 125.0 0.694 -92.2 -25.5 125.0 0.694 0.0
GLN D:216 D:216 126.0 0.7 -91.7 -25.5 NA NA NA
GLN E:216 E:216 128.0 0.711 -93.9 -24.8 NA NA NA
GLN F:216 F:216 126.0 0.7 -91.5 -25.9 NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 GLN A:216 A:216 125.0 0.694 -89.1 -23.3 125.0 0.694 0.0 EDO
HOH
 7.053
2.927
 O
O
 C1
O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 GLN A:216 A:216 120.0 0.667 -88.7 -23.4 120.0 0.667 0.0 SO4
HOH
 6.942
2.835
 OE1
OE1
 O4
O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 GLN A:216 A:216 120.0 0.667 -89.7 -25.0 120.0 0.667 0.0 SO4
SO4
HOH
 7.055
9.459
2.764
 OE1
CG
O
 O2
O1
O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 GLN A:216 A:216 122.0 0.678 -83.7 -24.0 NA NA NA
GLN B:216 B:216 114.0 0.633 -98.4 -20.8 NA NA NA
GLN C:216 C:216 126.0 0.7 -94.1 -23.4 126.0 0.7 0.0 HOH
 3.218
 OE1
 O
GLN D:216 D:216 123.0 0.683 -93.9 -18.9 123.0 0.683 0.0 HOH
 3.923
 CG
 O
GLN E:216 E:216 119.0 0.661 -98.4 -18.4 NA NA NA
GLN F:216 F:216 118.0 0.656 -101.2 -19.0 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 GLN A:216 A:216 125.0 0.694 -99.4 -23.4 NA NA NA
GLN B:216 B:216 122.0 0.678 -101.0 -20.8 NA NA NA
GLN C:216 C:216 115.0 0.639 -102.0 -21.1 NA NA NA
GLN D:216 D:216 116.0 0.644 -101.0 -21.7 NA NA NA
GLN E:216 E:216 116.0 0.644 -101.3 -21.1 116.0 0.644 0.0 HOH
 5.191
 OE1
 O
GLN F:216 F:216 124.0 0.689 -101.0 -22.1 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 GLN C:216 C:216 125.0 0.694 -92.3 -25.0 NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 GLN A:216 A:216 114.0 0.633 -86.0 -34.7 114.0 0.633 0.0 HOH
 8.306
 N
 O
GLN B:216 B:216 115.0 0.639 -95.0 -41.8 NA NA NA
GLN C:216 C:216 124.0 0.689 -79.2 -95.3 124.0 0.689 0.0 HOH
 3.643
 NE2
 O
GLN D:216 D:216 67.0 NA -91.3 37.1 NA NA NA
GLN E:216 E:216 152.0 0.844 -80.7 -29.4 NA NA NA
GLN F:216 F:216 149.0 0.828 -86.5 -36.1 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 GLN A:146 A:216 124.0 0.689 -100.5 -14.4 124.0 0.689 0.0 HOH
 3.402
 NE2
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 GLN A:146 A:216 132.0 0.733 -114.9 -13.5 132.0 0.733 0.0
GLN B:146 B:216 134.0 0.744 -110.1 -8.6 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 GLN A:173 A:216 116.0 0.644 -95.9 -22.2 116.0 0.644 0.0 HOH
 2.577
 NE2
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 GLN A:148 A:216 130.0 0.722 -110.3 -18.6 130.0 0.722 0.0 HOH
 3.833
 O
 O
GLN B:148 B:216 134.0 0.744 -112.1 -14.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 GLN A:216 A:216 128.0 0.711 -95.7 -21.0