Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230379165 . G A CCDS1582.1:NM_004481.3:c.721Gtg>Atg_NP_004472.1:p.241V>M Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 VAL A:241 A:241 4.0 0.026 H -79.6 -26.3 NA NA NA
VAL B:241 B:241 4.0 0.026 H -79.8 -25.4 NA NA NA
VAL C:241 C:241 4.0 0.026 H -79.9 -26.5 4.0 0.026 0.0 HOH
 4.484
 O
 O
VAL D:241 D:241 3.0 0.019 H -79.7 -24.4 NA NA NA
VAL E:241 E:241 3.0 0.019 H -82.3 -24.1 NA NA NA
VAL F:241 F:241 4.0 0.026 H -80.6 -25.4 4.0 0.026 0.0 HOH
 7.522
 N
 O
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 VAL A:241 A:241 3.0 0.019 H -80.6 -23.7 NA NA NA
VAL B:241 B:241 3.0 0.019 H -81.0 -24.6 3.0 0.019 0.0 HOH
 4.262
 CB
 O
VAL C:241 C:241 4.0 0.026 H -81.9 -22.7 NA NA NA
VAL D:241 D:241 4.0 0.026 H -80.4 -24.3 NA NA NA
VAL E:241 E:241 4.0 0.026 H -81.4 -24.3 NA NA NA
VAL F:241 F:241 4.0 0.026 H -82.4 -23.8 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 VAL A:241 A:241 3.0 0.019 H -79.6 -20.6 3.0 0.019 0.0
VAL B:241 B:241 4.0 0.026 H -78.9 -21.6 4.0 0.026 0.0
VAL D:241 D:241 4.0 0.026 H -78.8 -20.5 NA NA NA
VAL E:241 E:241 3.0 0.019 H -78.9 -21.2 NA NA NA
VAL F:241 F:241 3.0 0.019 H -79.3 -20.7 NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 VAL A:241 A:241 3.0 0.019 H -72.1 -34.1 3.0 0.019 0.0 EDO
HOH
 8.907
2.874
 O
O
 O2
O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 VAL A:241 A:241 1.0 0.006 H -73.3 -33.4 1.0 0.006 0.0 SO4
SO4
SO4
HOH
 8.709
4.640
8.297
2.752
 N
O
N
O
 O1
O1
O4
O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 VAL A:241 A:241 2.0 0.013 H -73.9 -34.4 2.0 0.013 0.0 SO4
SO4
HOH
 4.416
8.874
2.711
 O
N
O
 O3
O3
O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 VAL A:241 A:241 2.0 0.013 H -84.5 -24.3 NA NA NA
VAL B:241 B:241 2.0 0.013 H -78.2 -26.5 NA NA NA
VAL C:241 C:241 4.0 0.026 H -79.8 -28.9 4.0 0.026 0.0 HOH
 4.263
 CB
 O
VAL D:241 D:241 4.0 0.026 H -78.5 -30.8 4.0 0.026 0.0 HOH
 4.124
 CG1
 O
VAL E:241 E:241 3.0 0.019 H -76.7 -26.3 NA NA NA
VAL F:241 F:241 5.0 0.032 H -69.9 -27.4 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 VAL A:241 A:241 2.0 0.013 H -79.4 -27.1 NA NA NA
VAL B:241 B:241 3.0 0.019 H -79.1 -27.4 NA NA NA
VAL C:241 C:241 4.0 0.026 H -79.4 -27.2 NA NA NA
VAL D:241 D:241 3.0 0.019 H -79.5 -27.3 NA NA NA
VAL E:241 E:241 3.0 0.019 H -79.5 -27.2 3.0 0.019 0.0 HOH
 2.890
 O
 O
VAL F:241 F:241 3.0 0.019 H -80.0 -26.8 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 VAL C:241 C:241 3.0 0.019 H -77.4 -22.2 NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 VAL A:241 A:241 5.0 0.032 H -69.2 -37.9 5.0 0.032 0.0
VAL B:241 B:241 3.0 0.019 H -68.3 -38.1 NA NA NA
VAL C:241 C:241 6.0 0.039 H -67.4 -38.7 6.0 0.039 0.0
VAL D:241 D:241 4.0 0.026 H -67.8 -38.4 NA NA NA
VAL E:241 E:241 3.0 0.019 H -68.2 -37.9 NA NA NA
VAL F:241 F:241 4.0 0.026 H -67.3 -37.9 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 VAL A:171 A:241 4.0 0.026 H -70.7 -33.0 4.0 0.026 0.0 HOH
 2.696
 O
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 VAL A:171 A:241 5.0 0.032 H -63.7 -42.6 5.0 0.032 0.0
VAL B:171 B:241 4.0 0.026 H -70.3 -18.8 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 VAL A:198 A:241 4.0 0.026 H -74.7 -33.5 4.0 0.026 0.0 HOH
 2.910
 O
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 VAL A:173 A:241 5.0 0.032 H -68.7 -36.3 5.0 0.032 0.0
VAL B:173 B:241 5.0 0.032 H -70.0 -34.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 VAL A:241 A:241 4.0 0.026 H -72.4 -35.0