Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230381812 . A C CCDS1582.1:NM_004481.3:c.733Agg>Cgg_NP_004472.1:p.245R>R Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:245 A:245 92.0 0.409 T -69.2 -6.6 NA NA NA
ARG B:245 B:245 88.0 0.391 T -68.5 -6.1 NA NA NA
ARG C:245 C:245 80.0 0.356 T -68.4 -6.0 80.0 0.356 0.0 HOH
 3.170
 N
 O
ARG D:245 D:245 80.0 0.356 T -73.3 0.0 NA NA NA
ARG E:245 E:245 90.0 0.4 T -71.0 -5.6 NA NA NA
ARG F:245 F:245 91.0 0.404 T -70.1 -6.5 91.0 0.404 0.0 HOH
 9.047
 C
 O
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:245 A:245 86.0 0.382 T -68.9 -2.4 NA NA NA
ARG B:245 B:245 86.0 0.382 T -69.9 -3.1 86.0 0.382 0.0 EDO
HOH
 7.260
2.684
 NH1
O
 C2
O
ARG C:245 C:245 87.0 0.387 T -71.9 -0.8 NA NA NA
ARG D:245 D:245 84.0 0.373 T -71.2 -1.8 NA NA NA
ARG E:245 E:245 83.0 0.369 T -72.8 -2.2 NA NA NA
ARG F:245 F:245 86.0 0.382 T -71.0 -1.3 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:245 A:245 82.0 0.364 T -70.5 -8.7 82.0 0.364 0.0
ARG B:245 B:245 84.0 0.373 T -71.0 -9.5 84.0 0.373 0.0
ARG D:245 D:245 83.0 0.369 T -69.1 -10.5 NA NA NA
ARG E:245 E:245 91.0 0.404 T -69.6 -9.5 NA NA NA
ARG F:245 F:245 88.0 0.391 T -69.4 -9.3 NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:245 A:245 94.0 0.418 T -71.2 -9.2 94.0 0.418 0.0 EDO
HOH
 6.727
2.796
 N
O
 O2
O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:245 A:245 91.0 0.404 T -66.5 -12.5 91.0 0.404 0.0 SO4
SO4
HOH
 7.891
2.754
2.724
 N
N
NH1
 O1
O1
O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:245 A:245 88.0 0.391 T -63.4 -9.4 88.0 0.391 0.0 SO4
SO4
HOH
 2.987
8.194
2.714
 N
N
NE
 O3
O3
O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 ARG A:245 A:245 94.0 0.418 T -65.4 -11.1 NA NA NA
ARG B:245 B:245 87.0 0.387 T -73.6 -5.1 NA NA NA
ARG C:245 C:245 81.0 0.36 T -65.4 -9.8 81.0 0.36 0.0 HOH
 2.656
 O
 O
ARG D:245 D:245 95.0 0.422 T -75.3 -1.8 95.0 0.422 0.0 HOH
 2.756
 NH1
 O
ARG E:245 E:245 91.0 0.404 T -65.9 -5.7 NA NA NA
ARG F:245 F:245 86.0 0.382 T -68.0 -5.7 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 ARG A:245 A:245 89.0 0.396 T -62.4 -10.2 NA NA NA
ARG B:245 B:245 91.0 0.404 T -62.3 -10.2 NA NA NA
ARG C:245 C:245 82.0 0.364 T -63.1 -9.5 NA NA NA
ARG D:245 D:245 93.0 0.413 T -63.1 -9.9 NA NA NA
ARG E:245 E:245 91.0 0.404 T -62.6 -9.7 91.0 0.404 0.0 HOH
 2.565
 O
 O
ARG F:245 F:245 85.0 0.378 T -62.6 -10.2 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 ARG C:245 C:245 83.0 0.369 T -69.8 -9.8 NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 ARG A:245 A:245 91.0 0.404 T -60.2 -22.9 91.0 0.404 0.0 HOH
 8.787
 CD
 O
ARG B:245 B:245 97.0 0.431 T -54.9 -26.6 NA NA NA
ARG C:245 C:245 94.0 0.418 T -62.5 -19.2 94.0 0.418 0.0 HOH
 7.563
 NH1
 O
ARG D:245 D:245 89.0 0.396 T -63.7 -18.0 NA NA NA
ARG E:245 E:245 89.0 0.396 T -63.2 -18.5 NA NA NA
ARG F:245 F:245 112.0 0.498 T -58.5 -23.3 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ARG A:175 A:245 119.0 0.529 T -64.1 -14.6 119.0 0.529 0.0 HOH
 2.685
 O
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ARG A:175 A:245 96.0 0.427 T -40.7 -29.1 96.0 0.427 0.0
ARG B:175 B:245 127.0 0.564 T -64.1 -16.2 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 ARG A:202 A:245 112.0 0.498 T -59.1 -14.6 112.0 0.498 0.0 HOH
 2.862
 O
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 ARG A:177 A:245 93.0 0.413 T -55.3 -23.0 93.0 0.413 0.0
ARG B:177 B:245 137.0 0.609 T -54.9 -21.8 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 ARG A:245 A:245 77.0 0.342 T -60.0 -18.0