Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230381819 . G A CCDS1582.1:NM_004481.3:c.740cGg>cAg_NP_004472.1:p.247R>Q Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:247 A:247 35.0 0.156 E -86.7 134.0 NA NA NA
ARG B:247 B:247 37.0 0.164 E -85.8 132.3 NA NA NA
ARG C:247 C:247 36.0 0.16 E -85.6 132.9 36.0 0.16 0.0 HOH
 3.120
 NE
 O
ARG D:247 D:247 37.0 0.164 E -85.5 132.5 NA NA NA
ARG E:247 E:247 34.0 0.151 E -88.4 134.1 NA NA NA
ARG F:247 F:247 36.0 0.16 E -87.1 132.7 36.0 0.16 0.0 HOH
 3.806
 NH2
 O
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:247 A:247 40.0 0.178 E -87.7 128.9 NA NA NA
ARG B:247 B:247 37.0 0.164 E -86.4 128.6 37.0 0.164 0.0 HOH
 2.706
 O
 O
ARG C:247 C:247 37.0 0.164 E -85.3 130.1 NA NA NA
ARG D:247 D:247 37.0 0.164 E -86.1 128.5 NA NA NA
ARG E:247 E:247 39.0 0.173 E -86.2 127.9 NA NA NA
ARG F:247 F:247 40.0 0.178 E -85.7 129.1 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:247 A:247 39.0 0.173 E -72.2 125.6 39.0 0.173 0.0
ARG B:247 B:247 39.0 0.173 E -69.9 125.9 39.0 0.173 0.0
ARG D:247 D:247 40.0 0.178 E -71.6 125.5 NA NA NA
ARG E:247 E:247 40.0 0.178 E -72.5 127.8 NA NA NA
ARG F:247 F:247 39.0 0.173 E -71.3 126.4 NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:247 A:247 31.0 0.138 E -88.8 133.7 31.0 0.138 0.0 EDO
EDO
HOH
 7.050
3.553
2.714
 NH2
NE
O
 O2
C1
O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:247 A:247 33.0 0.147 E -90.4 127.6 33.0 0.147 0.0 SO4
SO4
SO4
HOH
 2.812
7.170
5.789
2.763
 NE
N
NH1
O
 O1
O1
O4
O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:247 A:247 34.0 0.151 E -86.6 130.2 34.0 0.151 0.0 SO4
SO4
HOH
 6.744
2.876
2.640
 N
NE
O
 O4
O3
O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 ARG A:247 A:247 38.0 0.169 E -86.0 128.5 NA NA NA
ARG B:247 B:247 37.0 0.164 E -90.0 128.5 NA NA NA
ARG C:247 C:247 38.0 0.169 E -86.5 129.1 38.0 0.169 0.0 HOH
 2.474
 O
 O
ARG D:247 D:247 35.0 0.156 E -91.2 127.0 35.0 0.156 0.0 HOH
 2.654
 O
 O
ARG E:247 E:247 39.0 0.173 E -89.1 133.6 NA NA NA
ARG F:247 F:247 34.0 0.151 E -79.0 130.7 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 ARG A:247 A:247 33.0 0.147 E -85.0 128.8 NA NA NA
ARG B:247 B:247 34.0 0.151 E -84.8 128.9 NA NA NA
ARG C:247 C:247 33.0 0.147 E -84.8 129.2 NA NA NA
ARG D:247 D:247 33.0 0.147 E -85.1 129.3 NA NA NA
ARG E:247 E:247 33.0 0.147 E -85.3 128.9 33.0 0.147 0.0 HOH
 2.653
 O
 O
ARG F:247 F:247 34.0 0.151 E -84.1 129.2 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 ARG C:247 C:247 39.0 0.173 E -70.7 127.3 NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 ARG A:247 A:247 38.0 0.169 E -73.1 131.2 38.0 0.169 0.0 HOH
 8.105
 NH1
 O
ARG B:247 B:247 32.0 0.142 E -71.8 132.0 NA NA NA
ARG C:247 C:247 37.0 0.164 E -73.3 131.5 37.0 0.164 0.0
ARG D:247 D:247 24.0 0.107 E -73.1 132.2 NA NA NA
ARG E:247 E:247 31.0 0.138 E -75.2 131.7 NA NA NA
ARG F:247 F:247 39.0 0.173 E -73.4 131.2 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ARG A:177 A:247 36.0 0.16 E -92.0 125.9 36.0 0.16 0.0 HOH
 2.719
 O
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ARG A:177 A:247 35.0 0.156 E -93.1 121.8 35.0 0.156 0.0
ARG B:177 B:247 38.0 0.169 E -82.8 123.2 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 ARG A:204 A:247 36.0 0.16 E -86.6 128.1 36.0 0.16 0.0 HOH
 2.664
 O
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 ARG A:179 A:247 31.0 0.138 E -80.8 140.5 31.0 0.138 0.0
ARG B:179 B:247 33.0 0.147 E -81.3 141.6 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 ARG A:247 A:247 40.0 0.178 E -83.9 126.1