Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230384977 . C A CCDS1582.1:NM_004481.3:c.865Cag>Aag_NP_004472.1:p.289Q>K Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 GLN A:289 A:289 51.0 0.283 H -58.5 -46.5 NA NA NA
GLN B:289 B:289 40.0 0.222 H -57.7 -47.6 NA NA NA
GLN C:289 C:289 39.0 0.217 H -57.2 -48.1 39.0 0.217 0.0 HOH
 4.911
 N
 O
GLN D:289 D:289 39.0 0.217 H -58.5 -47.6 NA NA NA
GLN E:289 E:289 48.0 0.267 H -58.5 -47.0 NA NA NA
GLN F:289 F:289 52.0 0.289 H -58.3 -46.9 52.0 0.289 0.0 HOH
 3.315
 CB
 O
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 GLN A:289 A:289 44.0 0.244 H -59.3 -44.7 NA NA NA
GLN B:289 B:289 34.0 0.189 H -58.7 -43.4 34.0 0.189 0.0 HOH
 6.840
 NE2
 O
GLN C:289 C:289 45.0 0.25 H -59.1 -44.9 NA NA NA
GLN D:289 D:289 46.0 0.256 H -63.3 -40.5 NA NA NA
GLN E:289 E:289 43.0 0.239 H -58.0 -44.9 NA NA NA
GLN F:289 F:289 44.0 0.244 H -59.2 -44.4 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 GLN A:289 A:289 50.0 0.278 H -56.1 -54.9 50.0 0.278 0.0
GLN B:289 B:289 50.0 0.278 H -55.7 -54.0 50.0 0.278 0.0
GLN D:289 D:289 57.0 0.317 H -100.6 -33.8 NA NA NA
GLN E:289 E:289 51.0 0.283 H -55.5 -54.9 NA NA NA
GLN F:289 F:289 62.0 0.344 H -56.1 -54.7 NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 GLN A:289 A:289 42.0 0.233 H -63.7 -38.3 42.0 0.233 0.0 SO4
HOH
 9.023
2.639
 O
OE1
 O3
O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 GLN A:289 A:289 40.0 0.222 H -63.2 -39.2 40.0 0.222 0.0 SO4
HOH
 8.543
2.815
 N
OE1
 O4
O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 GLN A:289 A:289 48.0 0.267 H -62.0 -39.0 48.0 0.267 0.0 HOH
 2.569
 OE1
 O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 GLN A:289 A:289 38.0 0.211 H -60.0 -41.0 NA NA NA
GLN B:289 B:289 40.0 0.222 H -58.9 -50.7 NA NA NA
GLN C:289 C:289 41.0 0.228 H -61.6 -48.3 41.0 0.228 0.0 EDO
HOH
 4.741
3.163
 NE2
CG
 O2
O
GLN D:289 D:289 50.0 0.278 H -56.8 -43.2 50.0 0.278 0.0 HOH
 2.985
 CG
 O
GLN E:289 E:289 43.0 0.239 H -64.9 -35.1 NA NA NA
GLN F:289 F:289 30.0 0.167 H -27.7 -60.8 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 GLN A:289 A:289 40.0 0.222 H -59.9 -47.8 NA NA NA
GLN B:289 B:289 41.0 0.228 H -60.3 -47.6 NA NA NA
GLN C:289 C:289 40.0 0.222 H -59.9 -47.9 NA NA NA
GLN D:289 D:289 41.0 0.228 H -60.8 -47.4 NA NA NA
GLN E:289 E:289 39.0 0.217 H -60.4 -47.8 39.0 0.217 0.0 HOH
 5.297
 N
 O
GLN F:289 F:289 40.0 0.222 H -60.4 -47.5 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 GLN C:289 C:289 50.0 0.278 H -56.5 -54.6 NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 GLN A:289 A:289 40.0 0.222 H -72.8 -55.6 40.0 0.222 0.0
GLN B:289 B:289 36.0 NA H -72.0 -51.3 NA NA NA
GLN C:289 C:289 40.0 0.222 H -72.8 -53.2 40.0 0.222 0.0
GLN D:289 D:289 29.0 0.161 H -144.6 -53.3 NA NA NA
GLN E:289 E:289 62.0 0.344 H -73.3 -53.3 NA NA NA
GLN F:289 F:289 31.0 NA H -73.0 -52.3 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 GLN A:219 A:289 37.0 0.206 H -64.9 -41.2 37.0 0.206 0.0 HOH
 3.098
 NE2
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 GLN A:219 A:289 26.0 0.144 H -50.3 -41.0 26.0 0.144 0.0
GLN B:219 B:289 28.0 0.156 H -69.2 -42.7 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 GLN A:246 A:289 42.0 0.233 H -59.3 -44.1 42.0 0.233 0.0 HOH
 2.956
 NE2
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 GLN A:221 A:289 36.0 0.2 H -48.3 -32.2 36.0 0.2 0.0 HOH
 6.487
 NE2
 O
GLN B:221 B:289 56.0 0.311 H -46.6 -66.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 GLN A:289 A:289 50.0 0.278 H -60.7 -42.2