Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230384989 . C A CCDS1582.1:NM_004481.3:c.877Cgg>Agg_NP_004472.1:p.293R>R Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:293 A:293 39.0 0.173 T -102.2 -4.7 NA NA NA
ARG B:293 B:293 41.0 0.182 T -99.0 -4.7 NA NA NA
ARG C:293 C:293 40.0 0.178 T -101.8 -3.7 40.0 0.178 0.0 HOH
 2.904
 NH1
 O
ARG D:293 D:293 37.0 0.164 T -101.7 -4.5 NA NA NA
ARG E:293 E:293 41.0 0.182 T -99.2 -4.5 NA NA NA
ARG F:293 F:293 42.0 0.187 T -97.3 -4.1 42.0 0.187 0.0 HOH
 2.968
 NH1
 O
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:293 A:293 37.0 0.164 H -99.8 -10.2 NA NA NA
ARG B:293 B:293 41.0 0.182 H -100.2 -9.5 41.0 0.182 0.0 HOH
 7.059
 NH2
 O
ARG C:293 C:293 42.0 0.187 H -98.3 -9.8 NA NA NA
ARG D:293 D:293 33.0 0.147 H -99.5 -10.4 NA NA NA
ARG E:293 E:293 38.0 0.169 T -100.0 -9.8 NA NA NA
ARG F:293 F:293 38.0 0.169 H -99.8 -10.2 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:293 A:293 40.0 0.178 H -95.4 -22.1 40.0 0.178 0.0
ARG B:293 B:293 39.0 0.173 H -95.9 -22.1 39.0 0.173 0.0
ARG D:293 D:293 23.0 0.102 H -75.1 -41.2 NA NA NA
ARG E:293 E:293 38.0 0.169 H -95.5 -22.2 NA NA NA
ARG F:293 F:293 40.0 0.178 H -95.7 -21.8 NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:293 A:293 38.0 0.169 H -67.1 -39.2 38.0 0.169 0.0 SO4
EDO
EDO
HOH
 2.821
9.716
9.640
2.872
 NH1
CD
O
NH1
 O3
C2
C1
O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:293 A:293 41.0 0.182 H -62.8 -39.7 41.0 0.182 0.0 SO4
HOH
 2.696
2.948
 NH1
NH2
 O3
O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:293 A:293 40.0 0.178 H -62.6 -42.1 40.0 0.178 0.0 SO4
HOH
 2.719
2.890
 NH2
NH1
 O4
O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 ARG A:293 A:293 38.0 0.169 T -99.9 -1.1 NA NA NA
ARG B:293 B:293 38.0 0.169 H -98.9 -4.4 NA NA NA
ARG C:293 C:293 36.0 0.16 T -101.4 1.7 36.0 0.16 0.0 EDO
HOH
 9.786
2.594
 CD
NE
 O2
O
ARG D:293 D:293 38.0 0.169 H -93.4 -5.6 38.0 0.169 0.0 HOH
 2.473
 NE
 O
ARG E:293 E:293 34.0 0.151 H -108.3 -1.6 NA NA NA
ARG F:293 F:293 11.0 0.049 H -65.9 -38.3 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 ARG A:293 A:293 38.0 0.169 H -99.0 -8.2 NA NA NA
ARG B:293 B:293 39.0 0.173 T -100.2 -6.8 NA NA NA
ARG C:293 C:293 38.0 0.169 T -100.3 -5.4 NA NA NA
ARG D:293 D:293 36.0 0.16 T -100.5 -6.6 NA NA NA
ARG E:293 E:293 39.0 0.173 T -99.1 -7.1 39.0 0.173 0.0 HOH
 2.994
 NH2
 O
ARG F:293 F:293 25.0 0.111 T -102.0 -4.3 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 ARG C:293 C:293 38.0 0.169 H -95.5 -22.4 NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 ARG A:293 A:293 35.0 0.156 T -105.5 10.4 35.0 0.156 0.0 HOH
 5.671
 O
 O
ARG B:293 B:293 38.0 0.169 T -53.5 -102.4 NA NA NA
ARG C:293 C:293 41.0 0.182 T -104.5 21.4 41.0 0.182 0.0
ARG D:293 D:293 36.0 0.16 H -94.4 -42.4 NA NA NA
ARG E:293 E:293 22.0 0.098 H -110.6 -11.9 NA NA NA
ARG F:293 F:293 45.0 0.2 H -98.6 -19.9 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ARG A:223 A:293 40.0 0.178 T -96.0 5.1 40.0 0.178 0.0 HOH
 2.960
 NH2
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ARG A:223 A:293 23.0 0.102 H -81.2 -24.4 23.0 0.102 0.0
ARG B:223 B:293 18.0 0.08 H -71.0 -30.8 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 ARG A:250 A:293 41.0 0.182 T -98.1 -3.3 41.0 0.182 0.0 HOH
 2.885
 NH2
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 ARG A:225 A:293 21.0 0.093 H -82.6 -5.6 21.0 0.093 0.0
ARG B:225 B:293 33.0 0.147 G -86.1 9.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 ARG A:293 A:293 31.0 0.138 H -86.2 -11.9