Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230384992 . C A CCDS1582.1:NM_004481.3:c.880Cag>Aag_NP_004472.1:p.294Q>K Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 GLN A:294 A:294 78.0 NA T -53.2 -35.9 NA NA NA
GLN B:294 B:294 79.0 NA T -53.5 -36.4 NA NA NA
GLN C:294 C:294 80.0 NA T -53.7 -35.4 80.0 NA NA HOH
 3.791
 CA
 O
GLN D:294 D:294 79.0 NA T -54.1 -35.8 NA NA NA
GLN E:294 E:294 77.0 NA T -52.7 -36.0 NA NA NA
GLN F:294 F:294 79.0 NA T -52.7 -36.0 79.0 NA NA HOH
 8.207
 N
 O
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 GLN A:294 A:294 159.0 0.883 T -47.8 -35.7 NA NA NA
GLN B:294 B:294 164.0 0.911 T -48.0 -35.2 164.0 0.911 0.0 HOH
 8.289
 CG
 O
GLN C:294 C:294 143.0 0.794 T -46.5 -36.7 NA NA NA
GLN D:294 D:294 131.0 0.728 T -47.9 -35.5 NA NA NA
GLN E:294 E:294 146.0 0.811 T -48.9 -34.3 NA NA NA
GLN F:294 F:294 144.0 0.8 T -46.8 -35.6 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 GLN A:294 A:294 150.0 0.833 T -38.3 -36.2 146.0 0.811 0.022 B:Q10471:0.022
GLN B:294 B:294 155.0 0.861 T -42.1 -33.2 152.0 0.844 0.017 A:Q10471:0.017
GLN D:294 D:294 123.0 0.683 T -30.8 -41.9 NA NA NA
GLN E:294 E:294 136.0 0.756 T -39.4 -36.3 NA NA NA
GLN F:294 F:294 159.0 0.883 T -38.9 -36.4 NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 GLN A:294 A:294 98.0 0.544 H -59.0 -35.4 98.0 0.544 0.0 SO4
HOH
 3.766
2.204
 OE1
CB
 O3
O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 GLN A:294 A:294 106.0 0.589 H -61.3 -34.1 106.0 0.589 0.0 SO4
HOH
 5.086
2.673
 NE2
OE1
 O3
O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 GLN A:294 A:294 114.0 0.633 H -64.7 -30.7 114.0 0.633 0.0 SO4
HOH
 4.273
2.879
 NE2
O
 O4
O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 GLN A:294 A:294 146.0 0.811 T -67.8 -20.1 NA NA NA
GLN B:294 B:294 144.0 0.8 T -54.9 -36.0 NA NA NA
GLN C:294 C:294 154.0 0.856 T -50.5 -38.9 154.0 0.856 0.0 HOH
 4.185
 OE1
 O
GLN D:294 D:294 136.0 0.756 T -52.3 -35.1 136.0 0.756 0.0 HOH
 3.138
 O
 O
GLN E:294 E:294 155.0 0.861 T -43.5 -37.8 NA NA NA
GLN F:294 F:294 138.0 0.767 H -49.0 -44.8 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 GLN A:294 A:294 154.0 0.856 T -51.8 -32.7 NA NA NA
GLN B:294 B:294 142.0 0.789 T -53.7 -32.8 NA NA NA
GLN C:294 C:294 142.0 0.789 T -51.7 -32.6 NA NA NA
GLN D:294 D:294 154.0 0.856 T -55.5 -31.6 NA NA NA
GLN E:294 E:294 128.0 0.711 T -52.5 -31.9 128.0 0.711 0.0 HOH
 6.696
 NE2
 O
GLN F:294 F:294 160.0 0.889 T -52.8 -32.1 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 GLN C:294 C:294 166.0 0.922 T -39.7 -36.0 NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 GLN A:294 A:294 145.0 0.806 T -60.2 -43.6 139.0 0.772 0.034 C:Q10471:0.033
 HOH
 2.755
 O
 O
GLN B:294 B:294 192.0 1.0 T 22.8 -40.2 NA NA NA
GLN C:294 C:294 76.0 NA S -61.4 -44.5 76.0 NA NA
GLN D:294 D:294 67.0 NA H -35.7 -43.4 NA NA NA
GLN E:294 E:294 74.0 NA H -57.7 -44.1 NA NA NA
GLN F:294 F:294 83.0 NA T -48.1 -45.1 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 GLN A:224 A:294 145.0 0.806 S -66.1 -29.6 145.0 0.806 0.0 HOH
 3.117
 O
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 GLN A:224 A:294 151.0 0.839 H -67.2 -38.4 151.0 0.839 0.0
GLN B:224 B:294 158.0 0.878 H -80.0 -19.5 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 GLN A:251 A:294 161.0 0.894 T -62.3 -26.1 161.0 0.894 0.0 HOH
 3.572
 CB
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 GLN A:226 A:294 85.0 NA T -55.2 -48.9 85.0 NA NA
GLN B:226 B:294 83.0 NA G -60.4 -44.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 GLN A:294 A:294 156.0 0.867 T -58.6 -34.8