Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230385007 . G A CCDS1582.1:NM_004481.3:c.895Gcc>Acc_NP_004472.1:p.299A>T Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ALA A:299 A:299 22.0 0.191 S -69.1 154.8 NA NA NA
ALA B:299 B:299 22.0 0.191 S -66.4 153.7 NA NA NA
ALA C:299 C:299 22.0 0.191 S -68.1 153.8 22.0 0.191 0.0 HOH
 5.616
 O
 O
ALA D:299 D:299 21.0 0.183 S -68.8 155.0 NA NA NA
ALA E:299 E:299 21.0 0.183 S -64.4 154.1 NA NA NA
ALA F:299 F:299 22.0 0.191 S -68.0 153.0 22.0 0.191 0.0 HOH
 3.717
 CB
 O
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ALA A:299 A:299 21.0 0.183 S -72.3 155.3 NA NA NA
ALA B:299 B:299 22.0 0.191 S -69.9 150.7 22.0 0.191 0.0 HOH
 4.979
 N
 O
ALA C:299 C:299 22.0 0.191 S -71.8 155.1 NA NA NA
ALA D:299 D:299 21.0 0.183 S -70.6 156.3 NA NA NA
ALA E:299 E:299 22.0 0.191 S -67.8 157.8 NA NA NA
ALA F:299 F:299 22.0 0.191 S -70.2 154.2 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ALA A:299 A:299 22.0 0.191 S -69.0 155.3 22.0 0.191 0.0
ALA B:299 B:299 21.0 0.183 S -69.7 153.4 21.0 0.183 0.0
ALA D:299 D:299 20.0 0.174 S -70.7 155.7 NA NA NA
ALA E:299 E:299 22.0 0.191 S -69.2 154.5 NA NA NA
ALA F:299 F:299 22.0 0.191 S -70.4 153.2 NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ALA A:299 A:299 33.0 0.287 S -67.8 147.2 33.0 0.287 0.0 SO4
EDO
HOH
 9.006
3.409
2.858
 N
CB
O
 O4
C1
O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ALA A:299 A:299 32.0 0.278 S -68.4 143.5 32.0 0.278 0.0 SO4
SO4
SO4
HOH
 9.981
8.800
5.117
2.838
 C
N
CA
O
 O2
O3
O1
O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ALA A:299 A:299 32.0 0.278 S -67.7 144.0 32.0 0.278 0.0 SO4
SO4
HOH
 8.382
9.420
2.766
 N
C
O
 O2
O1
O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 ALA A:299 A:299 23.0 0.2 S -67.7 152.4 NA NA NA
ALA B:299 B:299 24.0 0.209 S -55.1 150.0 NA NA NA
ALA C:299 C:299 23.0 0.2 S -65.1 157.8 23.0 0.2 0.0 HOH
 3.195
 CB
 O
ALA D:299 D:299 23.0 0.2 S -66.6 154.7 23.0 0.2 0.0 HOH
 3.430
 CB
 O
ALA E:299 E:299 20.0 0.174 -67.8 146.0 NA NA NA
ALA F:299 F:299 11.0 0.096 -61.0 135.1 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 ALA A:299 A:299 23.0 0.2 S -71.4 155.8 NA NA NA
ALA B:299 B:299 23.0 0.2 S -71.6 155.3 NA NA NA
ALA C:299 C:299 22.0 0.191 S -71.1 155.6 NA NA NA
ALA D:299 D:299 23.0 0.2 S -72.0 156.3 NA NA NA
ALA E:299 E:299 23.0 0.2 S -70.7 155.8 23.0 0.2 0.0 HOH
 3.633
 CB
 O
ALA F:299 F:299 22.0 0.191 S -71.0 155.8 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 ALA C:299 C:299 22.0 0.191 S -70.7 154.9 NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 ALA A:299 A:299 16.0 0.139 S -64.2 158.7 16.0 0.139 0.0 HOH
 9.552
 CA
 O
ALA B:299 B:299 18.0 0.157 S -65.3 157.0 NA NA NA
ALA C:299 C:299 30.0 0.261 S -65.4 160.5 30.0 0.261 0.0
ALA D:299 D:299 20.0 0.174 S -68.7 153.3 NA NA NA
ALA E:299 E:299 20.0 0.174 S -64.3 155.5 NA NA NA
ALA F:299 F:299 24.0 0.209 S -66.6 158.2 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ALA A:229 A:299 23.0 0.2 S -68.9 156.4 23.0 0.2 0.0 HOH
 3.321
 CB
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ALA A:229 A:299 12.0 0.104 -60.4 140.0 12.0 0.104 0.0
ALA B:229 B:299 9.0 0.078 -72.3 138.0 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 ALA A:256 A:299 23.0 0.2 S -66.3 156.7 23.0 0.2 0.0 HOH
 3.365
 CB
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 ALA A:231 A:299 20.0 0.174 -59.0 150.8 20.0 0.174 0.0
ALA B:231 B:299 21.0 0.183 -58.8 151.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 ALA A:299 A:299 25.0 0.217 S -60.4 145.3