Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230386238 . A C CCDS1582.1:NM_004481.3:c.941gAt>gCt_NP_004472.1:p.314D>A Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ASP A:314 A:314 10.0 0.067 E -57.0 129.7 NA NA NA
ASP B:314 B:314 10.0 0.067 E -55.8 131.5 NA NA NA
ASP C:314 C:314 20.0 0.133 E -56.4 130.9 20.0 0.133 0.0 HOH
 6.495
 OD2
 O
ASP D:314 D:314 23.0 0.153 E -57.3 129.8 NA NA NA
ASP E:314 E:314 10.0 0.067 E -59.4 130.3 NA NA NA
ASP F:314 F:314 10.0 0.067 E -57.6 130.8 10.0 0.067 0.0
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ASP A:314 A:314 18.0 0.12 E -55.4 129.4 NA NA NA
ASP B:314 B:314 26.0 0.173 E -52.6 127.8 26.0 0.173 0.0 EDO
HOH
 5.541
2.796
 OD1
N
 C2
O
ASP C:314 C:314 19.0 0.127 E -57.8 130.0 NA NA NA
ASP D:314 D:314 25.0 0.167 E -57.3 130.4 NA NA NA
ASP E:314 E:314 18.0 0.12 E -58.9 129.5 NA NA NA
ASP F:314 F:314 25.0 0.167 E -55.7 128.7 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ASP A:314 A:314 16.0 0.107 E -60.1 124.4 16.0 0.107 0.0
ASP B:314 B:314 17.0 0.113 E -58.8 124.4 17.0 0.113 0.0
ASP D:314 D:314 22.0 0.147 E -58.8 124.3 NA NA NA
ASP E:314 E:314 16.0 0.107 E -60.8 124.3 NA NA NA
ASP F:314 F:314 16.0 0.107 E -60.1 124.8 NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ASP A:314 A:314 23.0 0.153 E -54.1 130.6 23.0 0.153 0.0 EDO
HOH
 8.572
2.826
 OD2
OD2
 O1
O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ASP A:314 A:314 24.0 0.16 E -52.8 131.8 24.0 0.16 0.0 SO4
HOH
 6.098
2.618
 OD2
OD2
 O1
O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ASP A:314 A:314 23.0 0.153 E -54.6 129.3 23.0 0.153 0.0 SO4
HOH
 5.744
2.840
 OD2
N
 O3
O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 ASP A:314 A:314 12.0 0.08 E -56.9 129.2 NA NA NA
ASP B:314 B:314 21.0 0.14 E -52.5 131.7 NA NA NA
ASP C:314 C:314 22.0 0.147 E -43.6 130.6 22.0 0.147 0.0 HOH
 3.018
 OD2
 O
ASP D:314 D:314 10.0 0.067 E -52.6 132.4 10.0 0.067 0.0 HOH
 2.687
 N
 O
ASP E:314 E:314 6.0 0.04 E -50.6 130.0 NA NA NA
ASP F:314 F:314 26.0 0.173 E -51.0 129.6 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 ASP A:314 A:314 11.0 0.073 E -54.0 131.3 NA NA NA
ASP B:314 B:314 17.0 0.113 E -51.3 130.7 NA NA NA
ASP C:314 C:314 22.0 0.147 E -53.5 131.5 NA NA NA
ASP D:314 D:314 11.0 0.073 E -52.6 130.7 NA NA NA
ASP E:314 E:314 12.0 0.08 E -53.2 131.0 12.0 0.08 0.0 HOH
 2.666
 OD2
 O
ASP F:314 F:314 24.0 0.16 E -53.2 131.1 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 ASP C:314 C:314 21.0 0.14 E -61.0 125.4 NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 ASP A:314 A:314 22.0 0.147 E -58.8 130.1 22.0 0.147 0.0 HOH
 7.293
 O
 O
ASP B:314 B:314 13.0 0.087 E -58.3 130.0 NA NA NA
ASP C:314 C:314 29.0 0.193 E -57.0 130.9 29.0 0.193 0.0
ASP D:314 D:314 25.0 0.167 E -56.8 128.9 NA NA NA
ASP E:314 E:314 24.0 0.16 E -59.1 131.1 NA NA NA
ASP F:314 F:314 11.0 0.073 E -59.7 129.3 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ASP A:244 A:314 26.0 0.173 E -55.7 131.8 26.0 0.173 0.0 HOH
 2.805
 OD1
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ASP A:244 A:314 26.0 0.173 E -66.7 138.3 26.0 0.173 0.0
ASP B:244 B:314 12.0 0.08 E -52.0 134.5 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 ASP A:271 A:314 28.0 0.187 E -48.9 131.3 28.0 0.187 0.0 HOH
 2.635
 OD1
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 ASP A:246 A:314 26.0 0.173 E -52.5 133.5 26.0 0.173 0.0 HOH
 8.871
 C
 O
ASP B:246 B:314 22.0 0.147 E -52.2 132.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 ASP A:314 A:314 20.0 0.133 E -59.1 132.6