Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230386241 . A C CCDS1582.1:NM_004481.3:c.944aAg>aCg_NP_004472.1:p.315K>T Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 LYS A:315 A:315 20.0 0.1 H -63.1 -46.0 NA NA NA
LYS B:315 B:315 19.0 0.095 H -65.4 -43.7 NA NA NA
LYS C:315 C:315 41.0 0.205 H -62.7 -44.1 41.0 0.205 0.0 HOH
 3.908
 CE
 O
LYS D:315 D:315 40.0 0.2 H -63.2 -44.6 NA NA NA
LYS E:315 E:315 19.0 0.095 H -64.8 -42.7 NA NA NA
LYS F:315 F:315 19.0 0.095 H -65.6 -44.1 19.0 0.095 0.0
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 LYS A:315 A:315 42.0 0.21 H -62.3 -41.3 NA NA NA
LYS B:315 B:315 42.0 0.21 H -65.2 -40.2 42.0 0.21 0.0 EDO
HOH
 3.788
2.959
 NZ
NZ
 C2
O
LYS C:315 C:315 41.0 0.205 H -65.4 -40.1 NA NA NA
LYS D:315 D:315 40.0 0.2 H -65.3 -40.2 NA NA NA
LYS E:315 E:315 41.0 0.205 H -63.6 -39.8 NA NA NA
LYS F:315 F:315 41.0 0.205 H -64.4 -40.2 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 LYS A:315 A:315 44.0 0.22 H -59.3 -46.4 44.0 0.22 0.0
LYS B:315 B:315 45.0 0.225 H -58.4 -41.7 45.0 0.225 0.0
LYS D:315 D:315 43.0 0.215 H -57.8 -47.4 NA NA NA
LYS E:315 E:315 33.0 0.165 H -59.0 -47.0 NA NA NA
LYS F:315 F:315 36.0 0.18 H -57.9 -48.4 NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 LYS A:315 A:315 20.0 0.1 H -63.6 -43.4 20.0 0.1 0.0 EDO
HOH
 9.193
3.247
 NZ
NZ
 O1
O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 LYS A:315 A:315 22.0 0.11 H -63.8 -42.5 22.0 0.11 0.0 HOH
 3.256
 NZ
 O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 LYS A:315 A:315 22.0 0.11 H -61.2 -45.6 22.0 0.11 0.0 SO4
HOH
 9.869
3.454
 N
CD
 O3
O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 LYS A:315 A:315 20.0 0.1 H -64.7 -41.0 NA NA NA
LYS B:315 B:315 22.0 0.11 H -65.6 -41.9 NA NA NA
LYS C:315 C:315 43.0 0.215 H -65.9 -42.4 43.0 0.215 0.0 HOH
 2.909
 NZ
 O
LYS D:315 D:315 19.0 0.095 H -64.3 -45.4 19.0 0.095 0.0 HOH
 3.890
 CE
 O
LYS E:315 E:315 17.0 0.085 H -68.1 -40.7 NA NA NA
LYS F:315 F:315 40.0 0.2 H -64.7 -47.6 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 LYS A:315 A:315 20.0 0.1 H -64.4 -39.1 NA NA NA
LYS B:315 B:315 19.0 0.095 H -65.6 -38.5 NA NA NA
LYS C:315 C:315 40.0 0.2 H -64.5 -39.1 NA NA NA
LYS D:315 D:315 18.0 0.09 H -66.8 -37.8 NA NA NA
LYS E:315 E:315 19.0 0.095 H -64.8 -38.7 19.0 0.095 0.0 HOH
 5.943
 N
 O
LYS F:315 F:315 47.0 0.235 H -63.7 -39.3 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 LYS C:315 C:315 43.0 0.215 H -58.8 -47.5 NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 LYS A:315 A:315 48.0 0.24 H -61.5 -44.5 48.0 0.24 0.0 HOH
 3.470
 CG
 O
LYS B:315 B:315 34.0 0.17 H -60.4 -45.2 NA NA NA
LYS C:315 C:315 34.0 0.17 H -60.4 -45.5 34.0 0.17 0.0 HOH
 6.895
 NZ
 O
LYS D:315 D:315 37.0 0.185 H -62.6 -43.9 NA NA NA
LYS E:315 E:315 38.0 0.19 H -62.3 -43.8 NA NA NA
LYS F:315 F:315 50.0 0.25 H -61.2 -44.3 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 LYS A:245 A:315 22.0 0.11 H -60.8 -49.1 22.0 0.11 0.0 HOH
 3.435
 CG
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 LYS A:245 A:315 37.0 0.185 H -65.3 -48.9 37.0 0.185 0.0
LYS B:245 B:315 33.0 0.165 H -62.9 -47.8 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 LYS A:272 A:315 24.0 0.12 H -66.7 -47.9 24.0 0.12 0.0 HOH
 3.519
 N
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 LYS A:247 A:315 37.0 0.185 H -64.5 -49.0 37.0 0.185 0.0 HOH
 2.934
 NZ
 O
LYS B:247 B:315 36.0 0.18 H -63.8 -49.3 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 LYS A:315 A:315 29.0 0.145 H -62.7 -46.1