Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230386273 . A C CCDS1582.1:NM_004481.3:c.976Atg>Ctg_NP_004472.1:p.326M>L Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 MET A:326 A:326 90.0 0.486 T -65.1 -10.2 NA NA NA
MET B:326 B:326 91.0 0.492 T -64.6 -10.6 NA NA NA
MET C:326 C:326 91.0 0.492 T -64.4 -10.0 91.0 0.492 0.0 HOH
 2.976
 N
 O
MET D:326 D:326 92.0 0.497 T -64.0 -10.2 NA NA NA
MET E:326 E:326 91.0 0.492 T -65.5 -9.6 NA NA NA
MET F:326 F:326 90.0 0.486 T -64.3 -10.3 90.0 0.486 0.0 HOH
 5.050
 CE
 O
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 MET A:326 A:326 92.0 0.497 T -65.6 -11.2 NA NA NA
MET B:326 B:326 91.0 0.492 T -66.6 -13.0 91.0 0.492 0.0 HOH
 4.845
 CE
 O
MET C:326 C:326 91.0 0.492 T -66.3 -11.2 NA NA NA
MET D:326 D:326 91.0 0.492 T -66.1 -10.5 NA NA NA
MET E:326 E:326 90.0 0.486 T -67.7 -11.3 NA NA NA
MET F:326 F:326 91.0 0.492 T -67.1 -11.6 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 MET A:326 A:326 93.0 0.503 T -75.6 -16.3 93.0 0.503 0.0
MET B:326 B:326 90.0 0.486 T -75.7 -17.2 90.0 0.486 0.0
MET D:326 D:326 93.0 0.503 T -75.2 -17.2 NA NA NA
MET E:326 E:326 94.0 0.508 T -76.0 -15.9 NA NA NA
MET F:326 F:326 95.0 0.514 T -74.7 -16.8 NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 MET A:326 A:326 74.0 0.4 T -76.7 -5.5 74.0 0.4 0.0 EDO
EDO
HOH
 2.563
9.821
3.198
 N
CE
CE
 O1
O1
O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 MET A:326 A:326 73.0 0.395 T -73.1 -8.1 73.0 0.395 0.0 SO4
SO4
HOH
 9.728
3.077
3.411
 C
N
CE
 O3
O1
O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 MET A:326 A:326 84.0 0.454 T -69.2 -15.0 84.0 0.454 0.0 HOH
 2.957
 O
 O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 MET A:326 A:326 76.0 0.411 T -73.3 -9.4 NA NA NA
MET B:326 B:326 82.0 0.443 T -68.1 -10.3 NA NA NA
MET C:326 C:326 70.0 0.378 T -72.1 -9.0 70.0 0.378 0.0 HOH
 3.049
 N
 O
MET D:326 D:326 90.0 0.486 T -76.1 -5.2 90.0 0.486 0.0 HOH
 3.633
 CG
 O
MET E:326 E:326 78.0 0.422 T -78.4 -12.5 NA NA NA
MET F:326 F:326 77.0 0.416 T -68.8 -9.6 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 MET A:326 A:326 91.0 0.492 T -65.7 -11.7 NA NA NA
MET B:326 B:326 90.0 0.486 T -64.7 -13.0 NA NA NA
MET C:326 C:326 88.0 0.476 T -64.9 -11.8 NA NA NA
MET D:326 D:326 90.0 0.486 T -65.7 -11.7 NA NA NA
MET E:326 E:326 89.0 0.481 T -64.8 -12.0 89.0 0.481 0.0 HOH
 2.741
 N
 O
MET F:326 F:326 89.0 0.481 T -65.8 -11.5 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 MET C:326 C:326 92.0 0.497 T -75.7 -17.2 NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 MET A:326 A:326 90.0 0.486 T -56.9 -18.9 90.0 0.486 0.0 HOH
 3.476
 N
 O
MET B:326 B:326 98.0 0.53 T -56.2 -20.7 NA NA NA
MET C:326 C:326 90.0 0.486 T -58.7 -19.2 90.0 0.486 0.0 HOH
 4.047
 CE
 O
MET D:326 D:326 96.0 0.519 T -58.1 -21.1 NA NA NA
MET E:326 E:326 84.0 0.454 T -55.9 -20.5 NA NA NA
MET F:326 F:326 118.0 0.638 T -51.0 -20.1 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 MET A:256 A:326 90.0 0.486 T -61.8 -13.8 90.0 0.486 0.0 HOH
 2.857
 O
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 MET A:256 A:326 72.0 0.389 T -52.8 -8.5 72.0 0.389 0.0
MET B:256 B:326 86.0 0.465 T -49.2 -6.1 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 MET A:283 A:326 89.0 0.481 T -70.1 -13.6 89.0 0.481 0.0 HOH
 3.018
 N
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 MET A:258 A:326 83.0 0.449 T -58.8 -21.7 83.0 0.449 0.0 HOH
 3.323
 N
 O
MET B:258 B:326 87.0 0.47 T -60.5 -18.8 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 MET A:326 A:326 88.0 0.476 T -65.3 -13.3