Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230386278 . G A CCDS1582.1:NM_004481.3:c.981atG>atA_NP_004472.1:p.327M>I Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 MET A:327 A:327 93.0 0.503 T -99.6 5.2 NA NA NA
MET B:327 B:327 93.0 0.503 T -100.2 5.9 NA NA NA
MET C:327 C:327 95.0 0.514 T -100.3 4.4 95.0 0.514 0.0 HOH
 4.888
 N
 O
MET D:327 D:327 92.0 0.497 T -101.5 5.1 NA NA NA
MET E:327 E:327 93.0 0.503 T -98.8 4.4 NA NA NA
MET F:327 F:327 92.0 0.497 T -99.2 5.2 92.0 0.497 0.0
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 MET A:327 A:327 96.0 0.519 T -94.9 0.3 NA NA NA
MET B:327 B:327 94.0 0.508 T -91.7 1.5 94.0 0.508 0.0 EDO
HOH
 8.646
4.621
 CE
SD
 C1
O
MET C:327 C:327 100.0 0.541 T -93.7 0.8 NA NA NA
MET D:327 D:327 95.0 0.514 T -95.4 1.1 NA NA NA
MET E:327 E:327 96.0 0.519 T -90.6 0.5 NA NA NA
MET F:327 F:327 93.0 0.503 T -93.5 1.2 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 MET A:327 A:327 85.0 0.459 T -93.4 3.9 85.0 0.459 0.0
MET B:327 B:327 95.0 0.514 T -96.1 5.0 95.0 0.514 0.0
MET D:327 D:327 86.0 0.465 T -96.5 5.2 NA NA NA
MET E:327 E:327 101.0 0.546 T -94.3 4.4 NA NA NA
MET F:327 F:327 171.0 0.924 T -96.2 4.8 NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 MET A:327 A:327 91.0 0.492 T -93.2 4.2 91.0 0.492 0.0 EDO
HOH
 4.339
3.423
 N
CG
 O1
O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 MET A:327 A:327 93.0 0.503 T -87.6 -0.2 93.0 0.503 0.0 SO4
SO4
SO4
HOH
 5.693
4.853
8.980
3.279
 SD
N
O
CG
 O3
O1
O1
O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 MET A:327 A:327 115.0 0.622 T -84.7 -0.5 115.0 0.622 0.0 HOH
 2.774
 O
 O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 MET A:327 A:327 94.0 0.508 T -83.8 -4.0 NA NA NA
MET B:327 B:327 90.0 0.486 T -90.2 -3.9 NA NA NA
MET C:327 C:327 76.0 0.411 T -92.8 8.3 76.0 0.411 0.0 GOL
HOH
 8.741
3.831
 CE
CG
 O2
O
MET D:327 D:327 76.0 0.411 T -107.5 13.6 76.0 0.411 0.0 HOH
 5.930
 CE
 O
MET E:327 E:327 80.0 0.432 T -81.7 -2.2 NA NA NA
MET F:327 F:327 81.0 0.438 T -99.7 5.9 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 MET A:327 A:327 89.0 0.481 T -91.1 -3.5 NA NA NA
MET B:327 B:327 98.0 0.53 T -92.6 -2.4 NA NA NA
MET C:327 C:327 95.0 0.514 T -92.7 -2.2 NA NA NA
MET D:327 D:327 96.0 0.519 T -90.6 -4.2 NA NA NA
MET E:327 E:327 99.0 0.535 T -92.8 -2.1 99.0 0.535 0.0 HOH
 4.882
 N
 O
MET F:327 F:327 93.0 0.503 T -93.3 -1.9 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 MET C:327 C:327 87.0 0.47 T -96.3 4.9 NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 MET A:327 A:327 108.0 0.584 T -94.5 8.7 108.0 0.584 0.0 HOH
 4.400
 N
 O
MET B:327 B:327 94.0 0.508 T -95.6 10.7 NA NA NA
MET C:327 C:327 101.0 0.546 T -96.3 11.3 101.0 0.546 0.0 HOH
 9.013
 SD
 O
MET D:327 D:327 104.0 0.562 T -96.4 13.3 NA NA NA
MET E:327 E:327 50.0 0.27 T -89.4 -1.1 NA NA NA
MET F:327 F:327 85.0 0.459 T -98.4 25.5 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 MET A:257 A:327 94.0 0.508 T -88.6 -1.8 94.0 0.508 0.0 HOH
 2.852
 O
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 MET A:257 A:327 76.0 0.411 T -101.3 7.4 76.0 0.411 0.0
MET B:257 B:327 84.0 0.454 T -109.5 20.0 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 MET A:284 A:327 89.0 0.481 T -89.0 -1.5 89.0 0.481 0.0 HOH
 2.793
 O
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 MET A:259 A:327 80.0 0.432 T -80.7 4.5 80.0 0.432 0.0 HOH
 4.046
 O
 O
MET B:259 B:327 75.0 0.405 T -88.8 14.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 MET A:327 A:327 92.0 0.497 T -93.0 0.5