Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230390976 . G A CCDS1582.1:NM_004481.3:c.1022cGc>cAc_NP_004472.1:p.341R>H Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:341 A:341 0.0 0.0 H -62.7 -47.3 NA NA NA
ARG B:341 B:341 0.0 0.0 H -62.4 -47.1 NA NA NA
ARG C:341 C:341 0.0 0.0 H -63.1 -46.5 0.0 0.0 0.0 HOH
 4.579
 NE
 O
ARG D:341 D:341 0.0 0.0 H -62.3 -47.9 NA NA NA
ARG E:341 E:341 0.0 0.0 H -63.7 -47.7 NA NA NA
ARG F:341 F:341 0.0 0.0 H -63.6 -47.6 0.0 0.0 0.0 HOH
 9.606
 O
 O
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:341 A:341 0.0 0.0 H -62.4 -47.3 NA NA NA
ARG B:341 B:341 0.0 0.0 H -61.9 -48.1 0.0 0.0 0.0 HOH
 4.631
 NH2
 O
ARG C:341 C:341 0.0 0.0 H -59.4 -47.4 NA NA NA
ARG D:341 D:341 0.0 0.0 H -61.2 -47.2 NA NA NA
ARG E:341 E:341 0.0 0.0 H -62.1 -45.1 NA NA NA
ARG F:341 F:341 0.0 0.0 H -59.9 -46.9 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:341 A:341 0.0 0.0 H -52.2 -52.8 0.0 0.0 0.0
ARG B:341 B:341 0.0 0.0 H -51.8 -52.5 0.0 0.0 0.0
ARG D:341 D:341 0.0 0.0 H -51.5 -52.6 NA NA NA
ARG E:341 E:341 0.0 0.0 H -50.7 -52.4 NA NA NA
ARG F:341 F:341 35.0 0.156 H -51.1 -53.1 NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:341 A:341 0.0 0.0 H -61.2 -42.6 0.0 0.0 0.0 EDO
HOH
 8.409
2.234
 NH1
NH2
 C1
O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:341 A:341 0.0 0.0 H -63.3 -43.3 0.0 0.0 0.0 SO4
HOH
 8.131
2.867
 NE
NH1
 O3
O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:341 A:341 0.0 0.0 H -64.9 -45.8 0.0 0.0 0.0 HOH
 2.821
 NH1
 O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 ARG A:341 A:341 0.0 0.0 H -63.1 -46.3 NA NA NA
ARG B:341 B:341 1.0 0.004 H -56.5 -48.6 NA NA NA
ARG C:341 C:341 0.0 0.0 H -65.0 -41.8 0.0 0.0 0.0 HOH
 2.923
 NH1
 O
ARG D:341 D:341 0.0 0.0 H -63.1 -45.6 0.0 0.0 0.0 HOH
 5.475
 NH2
 O
ARG E:341 E:341 0.0 0.0 H -58.4 -45.5 NA NA NA
ARG F:341 F:341 0.0 0.0 H -56.7 -47.1 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 ARG A:341 A:341 0.0 0.0 H -60.7 -48.4 NA NA NA
ARG B:341 B:341 0.0 0.0 H -60.1 -48.3 NA NA NA
ARG C:341 C:341 0.0 0.0 H -60.9 -47.7 NA NA NA
ARG D:341 D:341 0.0 0.0 H -60.2 -48.1 NA NA NA
ARG E:341 E:341 0.0 0.0 H -60.8 -48.1 0.0 0.0 0.0 HOH
 4.608
 NH1
 O
ARG F:341 F:341 0.0 0.0 H -60.7 -47.9 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 ARG C:341 C:341 0.0 0.0 H -49.4 -54.1 NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 ARG A:341 A:341 1.0 0.004 H -52.7 -54.9 1.0 0.004 0.0 HOH
 5.164
 NH1
 O
ARG B:341 B:341 0.0 0.0 H -53.8 -53.4 NA NA NA
ARG C:341 C:341 1.0 0.004 H -53.6 -54.2 1.0 0.004 0.0 HOH
 8.691
 O
 O
ARG D:341 D:341 7.0 0.031 H -51.8 -55.5 NA NA NA
ARG E:341 E:341 0.0 0.0 H -53.8 -54.0 NA NA NA
ARG F:341 F:341 2.0 0.009 H -52.9 -55.2 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ARG A:271 A:341 1.0 0.004 H -59.7 -46.2 1.0 0.004 0.0 HOH
 2.811
 NH2
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ARG A:271 A:341 1.0 0.004 H -57.5 -43.6 1.0 0.004 0.0
ARG B:271 B:341 0.0 0.0 H -45.9 -43.0 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 ARG A:298 A:341 0.0 0.0 H -60.2 -45.9 0.0 0.0 0.0 HOH
 2.779
 NH2
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 ARG A:273 A:341 0.0 0.0 H -61.5 -47.9 0.0 0.0 0.0 HOH
 7.677
 O
 O
ARG B:273 B:341 0.0 0.0 H -59.6 -46.3 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 ARG A:341 A:341 0.0 0.0 H -64.3 -47.9