Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230390978 . G A CCDS1582.1:NM_004481.3:c.1024Gtg>Atg_NP_004472.1:p.342V>M Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 VAL A:342 A:342 0.0 0.0 H -60.5 -46.8 NA NA NA
VAL B:342 B:342 0.0 0.0 H -60.6 -47.4 NA NA NA
VAL C:342 C:342 1.0 0.006 H -60.9 -47.9 1.0 0.006 0.0 HOH
 6.541
 O
 O
VAL D:342 D:342 0.0 0.0 H -60.8 -47.1 NA NA NA
VAL E:342 E:342 0.0 0.0 H -58.5 -48.1 NA NA NA
VAL F:342 F:342 0.0 0.0 H -59.8 -48.0 0.0 0.0 0.0 HOH
 6.422
 O
 O
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 VAL A:342 A:342 0.0 0.0 H -59.8 -46.9 NA NA NA
VAL B:342 B:342 0.0 0.0 H -59.1 -47.4 0.0 0.0 0.0 HOH
 4.079
 O
 O
VAL C:342 C:342 0.0 0.0 H -60.9 -47.3 NA NA NA
VAL D:342 D:342 0.0 0.0 H -59.3 -48.1 NA NA NA
VAL E:342 E:342 0.0 0.0 H -62.0 -48.8 NA NA NA
VAL F:342 F:342 0.0 0.0 H -59.6 -50.4 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 VAL A:342 A:342 0.0 0.0 H -53.8 -52.3 0.0 0.0 0.0
VAL B:342 B:342 1.0 0.006 H -55.0 -51.2 1.0 0.006 0.0
VAL D:342 D:342 1.0 0.006 H -53.9 -52.2 NA NA NA
VAL E:342 E:342 0.0 0.0 H -54.8 -51.5 NA NA NA
VAL F:342 F:342 0.0 0.0 H -54.6 -51.2 NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 VAL A:342 A:342 0.0 0.0 H -63.0 -51.4 0.0 0.0 0.0 EDO
HOH
 9.443
4.361
 CG1
O
 O2
O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 VAL A:342 A:342 0.0 0.0 H -61.9 -49.8 0.0 0.0 0.0 SO4
HOH
 9.856
4.337
 CG1
O
 O1
O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 VAL A:342 A:342 0.0 0.0 H -60.3 -48.6 0.0 0.0 0.0 HOH
 4.297
 O
 O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 VAL A:342 A:342 0.0 0.0 H -57.4 -49.8 NA NA NA
VAL B:342 B:342 0.0 0.0 H -58.3 -51.8 NA NA NA
VAL C:342 C:342 0.0 0.0 H -63.0 -46.2 0.0 0.0 0.0 HOH
 4.205
 O
 O
VAL D:342 D:342 0.0 0.0 H -60.3 -48.0 0.0 0.0 0.0 HOH
 4.039
 O
 O
VAL E:342 E:342 0.0 0.0 H -63.0 -47.0 NA NA NA
VAL F:342 F:342 0.0 0.0 H -63.5 -44.0 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 VAL A:342 A:342 0.0 0.0 H -59.6 -47.3 NA NA NA
VAL B:342 B:342 0.0 0.0 H -60.2 -46.9 NA NA NA
VAL C:342 C:342 0.0 0.0 H -59.8 -47.1 NA NA NA
VAL D:342 D:342 0.0 0.0 H -60.1 -46.8 NA NA NA
VAL E:342 E:342 0.0 0.0 H -59.8 -47.2 0.0 0.0 0.0 HOH
 7.514
 CG1
 O
VAL F:342 F:342 0.0 0.0 H -60.1 -46.9 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 VAL C:342 C:342 0.0 0.0 H -53.3 -52.1 NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 VAL A:342 A:342 0.0 0.0 H -57.3 -48.5 0.0 0.0 0.0 HOH
 9.236
 O
 O
VAL B:342 B:342 0.0 0.0 H -55.8 -50.2 NA NA NA
VAL C:342 C:342 0.0 0.0 H -57.0 -48.2 0.0 0.0 0.0 HOH
 8.541
 O
 O
VAL D:342 D:342 0.0 0.0 H -57.3 -48.7 NA NA NA
VAL E:342 E:342 1.0 0.006 H -55.0 -49.8 NA NA NA
VAL F:342 F:342 2.0 0.013 H -57.4 -47.9 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 VAL A:272 A:342 0.0 0.0 H -62.0 -48.7 0.0 0.0 0.0 HOH
 4.329
 O
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 VAL A:272 A:342 0.0 0.0 H -60.9 -55.9 0.0 0.0 0.0
VAL B:272 B:342 0.0 0.0 H -65.9 -47.3 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 VAL A:299 A:342 0.0 0.0 H -64.9 -45.4 0.0 0.0 0.0 HOH
 4.239
 O
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 VAL A:274 A:342 0.0 0.0 H -61.2 -50.8 0.0 0.0 0.0 HOH
 7.204
 O
 O
VAL B:274 B:342 0.0 0.0 H -61.1 -52.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 VAL A:342 A:342 0.0 0.0 H -57.2 -51.5