Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230391063 . C A CCDS1582.1:NM_004481.3:c.1109cCg>cAg_NP_004472.1:p.370P>Q Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 PRO A:370 A:370 86.0 0.593 T -63.9 115.6 NA NA NA
PRO B:370 B:370 88.0 0.607 T -61.4 115.4 NA NA NA
PRO C:370 C:370 88.0 0.607 T -67.7 122.1 88.0 0.607 0.0 UDP
HOH
 7.456
7.798
 CD
CD
 O4
O
PRO D:370 D:370 90.0 0.621 T -65.9 116.4 NA NA NA
PRO E:370 E:370 89.0 0.614 T -60.4 114.5 NA NA NA
PRO F:370 F:370 108.0 0.745 S -52.9 -54.0 108.0 0.745 0.0 UD2
 7.494
 CD
 O4
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 PRO A:370 A:370 79.0 0.545 T -50.0 113.1 NA NA NA
PRO B:370 B:370 82.0 0.566 T -50.0 114.2 82.0 0.566 0.0 HWU
HOH
 7.016
3.913
 CD
CG
 O4
O
PRO C:370 NA:NA DO NA DO DO DO NA NA NA
PRO D:370 D:370 82.0 0.566 T -51.7 116.6 NA NA NA
PRO E:370 E:370 79.0 0.545 T -53.1 114.2 NA NA NA
PRO F:370 F:370 77.0 0.531 T -50.4 114.4 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 PRO A:370 NA:NA DO NA DO DO DO NA NA NA
PRO B:370 NA:NA DO NA DO DO DO NA NA NA
PRO D:370 NA:NA DO NA DO DO DO NA NA NA
PRO E:370 NA:NA DO NA DO DO DO NA NA NA
PRO F:370 NA:NA DO NA DO DO DO NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 PRO A:370 A:370 92.0 0.634 S -52.7 156.7 92.0 0.634 0.0 EDO
EDO
EDO
HOH
 3.691
5.734
6.753
3.641
 CB
O
CG
CA
 C1
O1
O2
O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 PRO A:370 A:370 114.0 0.786 S -71.0 167.7 114.0 0.786 0.0 SO4
SO4
HOH
 5.408
6.976
3.045
 N
CB
O
 O1
O1
O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 PRO A:370 A:370 68.0 0.469 T -56.1 124.7 68.0 0.469 0.0 UDP
SO4
SO4
SO4
HOH
 6.375
6.054
4.781
3.842
2.665
 CD
CD
N
CG
O
 O4
O1
O2
O4
O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 PRO A:370 NA:NA DO NA DO DO DO NA NA NA
PRO B:370 NA:NA DO NA DO DO DO NA NA NA
PRO C:370 NA:NA DO NA DO DO DO NA NA NA
PRO D:370 NA:NA DO NA DO DO DO NA NA NA
PRO E:370 NA:NA DO NA DO DO DO NA NA NA
PRO F:370 NA:NA DO NA DO DO DO NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 PRO A:370 A:370 92.0 0.634 T -51.5 97.5 NA NA NA
PRO B:370 B:370 87.0 0.6 T -52.6 97.2 NA NA NA
PRO C:370 C:370 87.0 0.6 T -53.4 97.8 NA NA NA
PRO D:370 D:370 97.0 0.669 T -52.4 97.7 NA NA NA
PRO E:370 E:370 92.0 0.634 T -52.9 97.4 92.0 0.634 0.0 UDP
HOH
 7.557
4.878
 CD
C
 O4
O
PRO F:370 F:370 89.0 0.614 T -52.3 97.3 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 PRO C:370 NA:NA DO NA DO DO DO NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 PRO A:370 A:370 102.0 0.703 T -35.6 -62.9 102.0 0.703 0.0 LR7
HOH
 6.811
5.588
 CD
CG
 O4
O
PRO B:370 B:370 86.0 0.593 T -77.2 108.0 NA NA NA
PRO C:370 C:370 68.0 0.469 T -54.6 102.0 68.0 0.469 0.0 LR7
 6.603
 CD
 O4
PRO D:370 D:370 92.0 0.634 T -30.3 -76.3 NA NA NA
PRO E:370 E:370 99.0 0.683 S -80.5 76.1 NA NA NA
PRO F:370 NA:NA DO NA DO DO DO NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 PRO A:300 A:370 92.0 0.634 T -61.3 118.8 92.0 0.634 0.0 UDP
HOH
 7.448
2.788
 CD
O
 O4
O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 PRO A:300 A:370 75.0 0.517 T -50.9 138.3 75.0 0.517 0.0
PRO B:300 B:370 78.0 0.538 T -50.7 115.1 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 PRO A:327 A:370 79.0 0.545 T -48.1 114.0 79.0 0.545 0.0 UDP
HOH
 6.755
3.053
 CD
O
 O4
O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 PRO A:302 A:370 121.0 0.834 -17.6 360.0 121.0 0.834 0.0
PRO B:302 NA:NA DO NA DO DO DO NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 PRO A:370 A:370 96.0 0.662 T -56.9 116.9