Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230401006 . A C CCDS1582.1:NM_004481.3:c.1333Ata>Cta_NP_004472.1:p.445I>L Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ILE A:445 A:445 80.0 0.457 S -82.6 -36.6 NA NA NA
ILE B:445 B:445 79.0 0.451 S -85.5 -34.3 NA NA NA
ILE C:445 C:445 80.0 0.457 S -86.0 -36.0 80.0 0.457 0.0 HOH
 6.445
 O
 O
ILE D:445 D:445 79.0 0.451 S -84.9 -36.1 NA NA NA
ILE E:445 E:445 80.0 0.457 S -86.2 -35.9 NA NA NA
ILE F:445 F:445 109.0 0.623 S -84.6 -36.2 109.0 0.623 0.0
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ILE A:445 A:445 72.0 0.411 S -82.9 -35.0 NA NA NA
ILE B:445 B:445 72.0 0.411 S -84.0 -34.7 72.0 0.411 0.0 EDO
HOH
 9.893
5.116
 N
N
 O1
O
ILE C:445 C:445 82.0 0.469 S -85.2 -33.6 NA NA NA
ILE D:445 D:445 73.0 0.417 S -84.2 -35.1 NA NA NA
ILE E:445 E:445 70.0 0.4 S -86.5 -34.1 NA NA NA
ILE F:445 F:445 85.0 0.486 S -84.1 -34.5 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ILE A:445 A:445 69.0 0.394 S -81.3 -42.5 69.0 0.394 0.0
ILE B:445 B:445 55.0 0.314 S -82.7 -42.8 55.0 0.314 0.0
ILE D:445 D:445 75.0 0.429 S -81.2 -43.3 NA NA NA
ILE E:445 E:445 73.0 0.417 S -79.4 -44.8 NA NA NA
ILE F:445 NA:NA DO NA DO DO DO NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ILE A:445 A:445 63.0 0.36 S -84.0 -38.9 63.0 0.36 0.0 HOH
 3.673
 CD1
 O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ILE A:445 A:445 61.0 0.349 S -86.1 -40.0 61.0 0.349 0.0 SO4
HOH
 8.509
3.646
 O
CG2
 O3
O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ILE A:445 A:445 58.0 0.331 S -84.6 -39.5 58.0 0.331 0.0 SO4
HOH
 8.497
3.655
 O
CD1
 O1
O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 ILE A:445 A:445 65.0 0.371 S -91.7 -40.5 NA NA NA
ILE B:445 B:445 67.0 0.383 S -81.5 -30.7 NA NA NA
ILE C:445 C:445 68.0 0.389 S -94.4 -34.4 68.0 0.389 0.0 HOH
 3.014
 CD1
 O
ILE D:445 D:445 95.0 0.543 S -71.7 -40.9 95.0 0.543 0.0
ILE E:445 E:445 79.0 0.451 S -70.1 -36.6 NA NA NA
ILE F:445 F:445 75.0 0.429 S -79.2 -39.6 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 ILE A:445 A:445 78.0 0.446 S -82.8 -45.5 NA NA NA
ILE B:445 B:445 82.0 0.469 S -83.8 -44.1 NA NA NA
ILE C:445 C:445 81.0 0.463 S -83.4 -45.3 NA NA NA
ILE D:445 D:445 81.0 0.463 S -83.1 -44.1 NA NA NA
ILE E:445 E:445 109.0 0.623 S -84.2 -45.1 109.0 0.623 0.0
ILE F:445 F:445 79.0 0.451 S -83.7 -45.2 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 ILE C:445 C:445 77.0 0.44 S -80.2 -42.8 NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 ILE A:445 A:445 64.0 0.366 S -91.3 -42.9 64.0 0.366 0.0 HOH
 7.746
 N
 O
ILE B:445 B:445 65.0 0.371 S -91.9 -43.4 NA NA NA
ILE C:445 C:445 65.0 0.371 E -102.3 -43.5 65.0 0.371 0.0 HOH
 7.377
 N
 O
ILE D:445 D:445 71.0 0.406 S -92.5 -44.9 NA NA NA
ILE E:445 E:445 55.0 0.314 E -92.4 -46.6 NA NA NA
ILE F:445 F:445 76.0 0.434 E -92.5 -44.1 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ILE A:375 A:445 73.0 0.417 -63.4 132.3 73.0 0.417 0.0 HOH
 2.853
 CD1
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ILE A:375 A:445 34.0 0.194 S -94.1 -28.1 34.0 0.194 0.0
ILE B:375 B:445 45.0 0.257 E -74.8 -42.7 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 ILE A:402 A:445 46.0 0.263 S -128.9 140.2 46.0 0.263 0.0 HOH
 3.441
 CD1
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 ILE A:377 A:445 47.0 0.269 S -80.4 -40.9 47.0 0.269 0.0
ILE B:377 B:445 76.0 0.434 E -81.0 -40.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 ILE A:445 A:445 22.0 0.126 E -85.5 -38.8