Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230410255 . G A CCDS1582.1:NM_004481.3:c.1505cGg>cAg_NP_004472.1:p.502R>Q Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:502 A:502 133.0 0.591 -83.5 -5.5 NA NA NA
ARG B:502 B:502 132.0 0.587 -84.5 -8.1 NA NA NA
ARG C:502 C:502 132.0 0.587 -82.5 -5.7 132.0 0.587 0.0 HOH
 3.162
 CD
 O
ARG D:502 D:502 131.0 0.582 -83.4 -7.2 NA NA NA
ARG E:502 E:502 133.0 0.591 -82.7 -5.9 NA NA NA
ARG F:502 F:502 132.0 0.587 -84.0 -6.1 132.0 0.587 0.0
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:502 A:502 133.0 0.591 -84.1 -4.0 NA NA NA
ARG B:502 B:502 132.0 0.587 -85.3 -4.2 132.0 0.587 0.0 HOH
 3.151
 CG
 O
ARG C:502 C:502 134.0 0.596 -85.9 -5.0 NA NA NA
ARG D:502 D:502 132.0 0.587 -87.9 -4.6 NA NA NA
ARG E:502 E:502 135.0 0.6 -82.6 -4.7 NA NA NA
ARG F:502 F:502 131.0 0.582 -85.5 -4.5 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:502 A:502 133.0 0.591 -71.0 -11.6 133.0 0.591 0.0
ARG B:502 B:502 137.0 0.609 -69.2 -13.6 137.0 0.609 0.0
ARG D:502 D:502 138.0 0.613 -71.2 -11.6 NA NA NA
ARG E:502 E:502 137.0 0.609 -69.7 -11.5 NA NA NA
ARG F:502 NA:NA DO NA DO DO DO NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:502 A:502 129.0 0.573 -82.1 -5.1 129.0 0.573 0.0 HOH
 2.305
 NH2
 O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:502 A:502 134.0 0.596 -83.8 -6.3 134.0 0.596 0.0 SO4
HOH
 2.635
2.697
 N
O
 O1
O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:502 A:502 114.0 0.507 -81.0 -4.3 114.0 0.507 0.0 SO4
HOH
 2.765
2.695
 N
O
 O3
O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 ARG A:502 A:502 133.0 0.591 -85.5 -4.2 NA NA NA
ARG B:502 B:502 133.0 0.591 -82.4 -5.7 NA NA NA
ARG C:502 C:502 134.0 0.596 -82.1 -6.4 134.0 0.596 0.0 EDO
HOH
 8.351
3.152
 CD
CD
 C2
O
ARG D:502 D:502 221.0 0.982 -76.7 -16.8 221.0 0.982 0.0 HOH
 6.004
 NH2
 O
ARG E:502 E:502 128.0 0.569 -89.8 -1.1 NA NA NA
ARG F:502 F:502 124.0 0.551 -87.9 -1.6 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 ARG A:502 A:502 128.0 0.569 -90.0 -8.6 NA NA NA
ARG B:502 B:502 129.0 0.573 -88.6 -8.6 NA NA NA
ARG C:502 C:502 131.0 0.582 -90.0 -8.2 NA NA NA
ARG D:502 D:502 128.0 0.569 -90.3 -7.9 NA NA NA
ARG E:502 E:502 125.0 0.556 -89.9 -7.9 125.0 0.556 0.0 HOH
 8.026
 C
 O
ARG F:502 F:502 128.0 0.569 -89.6 -8.6 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 ARG C:502 C:502 240.0 1.0 -70.0 360.0 NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 ARG A:502 A:502 136.0 0.604 -68.6 -9.4 136.0 0.604 0.0
ARG B:502 B:502 65.0 NA -68.3 -7.2 NA NA NA
ARG C:502 C:502 143.0 0.636 -69.6 -9.5 143.0 0.636 0.0 HOH
 7.674
 N
 O
ARG D:502 D:502 135.0 0.6 -68.7 -7.9 NA NA NA
ARG E:502 E:502 105.0 NA -64.8 1.8 NA NA NA
ARG F:502 F:502 68.0 NA -59.8 68.8 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ARG A:432 A:502 115.0 0.511 -79.0 -9.9 115.0 0.511 0.0 HOH
 2.646
 NE
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ARG A:432 A:502 116.0 0.516 -89.3 21.0 116.0 0.516 0.0
ARG B:432 B:502 118.0 0.524 -79.9 14.7 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 ARG A:459 A:502 117.0 0.52 -76.9 -15.4 117.0 0.52 0.0 HOH
 2.658
 NE
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 ARG A:434 A:502 138.0 0.613 -79.0 1.4 138.0 0.613 0.0
ARG B:434 B:502 137.0 0.609 -79.1 1.6 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 ARG A:502 A:502 132.0 0.587 -91.2 -3.0