Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230415088 . G A CCDS1582.1:NM_004481.3:c.1600Gtg>Atg_NP_004472.1:p.534V>M Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 VAL A:534 A:534 43.0 0.277 T -57.8 131.4 NA NA NA
VAL B:534 B:534 44.0 0.284 T -57.5 131.2 NA NA NA
VAL C:534 C:534 42.0 0.271 T -55.8 131.5 42.0 0.271 0.0 HOH
 7.641
 O
 O
VAL D:534 D:534 42.0 0.271 T -56.6 132.5 NA NA NA
VAL E:534 E:534 43.0 0.277 T -56.0 132.3 NA NA NA
VAL F:534 F:534 46.0 0.297 T -57.2 131.3 46.0 0.297 0.0
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 VAL A:534 A:534 45.0 0.29 T -57.1 132.5 NA NA NA
VAL B:534 B:534 47.0 0.303 T -57.9 131.3 47.0 0.303 0.0 HOH
 8.326
 O
 O
VAL C:534 C:534 45.0 0.29 T -56.3 132.0 NA NA NA
VAL D:534 D:534 45.0 0.29 T -56.7 132.8 NA NA NA
VAL E:534 E:534 43.0 0.277 T -55.1 132.1 NA NA NA
VAL F:534 F:534 47.0 0.303 T -56.3 132.4 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 VAL A:534 A:534 40.0 0.258 T -54.8 134.8 40.0 0.258 0.0
VAL B:534 B:534 39.0 0.252 T -56.9 133.5 39.0 0.252 0.0
VAL D:534 D:534 39.0 0.252 T -55.7 133.7 NA NA NA
VAL E:534 E:534 39.0 0.252 T -58.0 133.8 NA NA NA
VAL F:534 NA:NA DO NA DO DO DO NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 VAL A:534 A:534 40.0 0.258 T -56.9 130.4 40.0 0.258 0.0 SO4
HOH
 8.873
2.574
 CA
O
 O3
O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 VAL A:534 A:534 45.0 0.29 T -59.9 136.2 45.0 0.29 0.0 SO4
SO4
HOH
 9.168
8.616
2.808
 CA
O
O
 O2
O1
O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 VAL A:534 A:534 40.0 0.258 T -63.5 135.5 40.0 0.258 0.0 SO4
HOH
 9.375
2.870
 CA
O
 O1
O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 VAL A:534 A:534 42.0 0.271 T -59.6 139.0 NA NA NA
VAL B:534 B:534 45.0 0.29 T -54.8 130.4 NA NA NA
VAL C:534 C:534 44.0 0.284 T -50.4 134.6 44.0 0.284 0.0 HOH
 4.162
 CG1
 O
VAL D:534 NA:NA DO NA DO DO DO NA NA NA
VAL E:534 E:534 48.0 0.31 T -61.2 134.4 NA NA NA
VAL F:534 F:534 40.0 0.258 T -48.2 122.9 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 VAL A:534 A:534 47.0 0.303 T -58.8 134.1 NA NA NA
VAL B:534 B:534 43.0 0.277 T -59.8 134.4 NA NA NA
VAL C:534 C:534 47.0 0.303 T -59.3 134.4 NA NA NA
VAL D:534 D:534 41.0 0.265 T -59.4 134.3 NA NA NA
VAL E:534 E:534 41.0 0.265 T -59.9 134.9 41.0 0.265 0.0 HOH
 9.418
 N
 O
VAL F:534 F:534 41.0 0.265 T -59.7 134.6 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 VAL C:534 C:534 66.0 0.426 -56.0 360.0 NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 VAL A:534 A:534 40.0 0.258 T -69.5 149.1 40.0 0.258 0.0
VAL B:534 B:534 40.0 0.258 T -63.8 145.5 NA NA NA
VAL C:534 C:534 50.0 0.323 T -74.1 150.6 50.0 0.323 0.0
VAL D:534 D:534 43.0 0.277 T -69.8 148.6 NA NA NA
VAL E:534 E:534 47.0 0.303 T -73.7 147.8 NA NA NA
VAL F:534 F:534 44.0 0.284 T -69.3 146.9 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 VAL A:464 A:534 34.0 0.219 T -57.5 132.8 34.0 0.219 0.0 HOH
 2.768
 O
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 VAL A:464 A:534 46.0 0.297 T -47.8 136.9 46.0 0.297 0.0
VAL B:464 B:534 28.0 0.181 T -50.5 125.8 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 VAL A:491 A:534 47.0 0.303 T -54.4 132.5 47.0 0.303 0.0 HOH
 2.699
 O
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 VAL A:466 A:534 40.0 0.258 T -50.5 123.7 40.0 0.258 0.0
VAL B:466 B:534 40.0 0.258 T -50.9 123.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 VAL A:534 A:534 42.0 0.271 T -61.8 139.8