Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230415116 . G A CCDS1582.1:NM_004481.3:c.1628cGc>cAc_NP_004472.1:p.543R>H Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:543 A:543 134.0 0.596 T -63.5 -16.8 NA NA NA
ARG B:543 B:543 138.0 0.613 T -62.4 -18.0 NA NA NA
ARG C:543 C:543 140.0 0.622 T -60.2 -19.2 140.0 0.622 0.0
ARG D:543 D:543 140.0 0.622 T -60.8 -19.4 NA NA NA
ARG E:543 E:543 134.0 0.596 T -62.3 -19.6 NA NA NA
ARG F:543 F:543 151.0 0.671 T -61.7 -17.8 151.0 0.671 0.0
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:543 A:543 140.0 0.622 T -66.1 -18.8 NA NA NA
ARG B:543 B:543 135.0 0.6 T -64.6 -18.2 135.0 0.6 0.0 EDO
HOH
 9.079
8.947
 O
C
 O1
O
ARG C:543 C:543 137.0 0.609 T -65.2 -18.4 NA NA NA
ARG D:543 D:543 138.0 0.613 T -65.5 -17.5 NA NA NA
ARG E:543 E:543 140.0 0.622 T -65.0 -21.2 NA NA NA
ARG F:543 F:543 136.0 0.604 T -65.1 -19.0 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 ARG A:543 A:543 133.0 0.591 T -63.7 -24.5 133.0 0.591 0.0
ARG B:543 B:543 129.0 0.573 T -62.4 -25.0 129.0 0.573 0.0
ARG D:543 D:543 130.0 0.578 T -62.1 -25.5 NA NA NA
ARG E:543 E:543 131.0 0.582 T -63.4 -24.9 NA NA NA
ARG F:543 NA:NA DO NA DO DO DO NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:543 A:543 158.0 0.702 T -60.6 -21.9 158.0 0.702 0.0 SO4
SO4
EDO
EDO
HOH
 2.854
3.274
2.666
5.844
3.227
 NH2
NH2
O
N
NH1
 O2
O4
O1
C1
O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:543 A:543 168.0 0.747 T -61.4 -22.5 168.0 0.747 0.0 SO4
HOH
 2.704
2.749
 NH2
O
 O2
O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 ARG A:543 A:543 153.0 0.68 T -60.2 -22.3 153.0 0.68 0.0 SO4
SO4
SO4
HOH
 2.890
3.348
9.838
2.746
 NH2
NH2
O
O
 O4
O1
O2
O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 ARG A:543 A:543 135.0 0.6 T -67.6 -19.7 NA NA NA
ARG B:543 B:543 131.0 0.582 T -66.4 -19.3 NA NA NA
ARG C:543 C:543 120.0 0.533 T -49.2 -38.5 120.0 0.533 0.0 HOH
 3.161
 O
 O
ARG D:543 NA:NA DO NA DO DO DO NA NA NA
ARG E:543 E:543 141.0 0.627 T -73.3 -15.8 NA NA NA
ARG F:543 F:543 131.0 0.582 T -66.4 -15.6 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 ARG A:543 A:543 133.0 0.591 T -63.5 -25.2 NA NA NA
ARG B:543 B:543 134.0 0.596 T -58.2 -29.4 NA NA NA
ARG C:543 C:543 133.0 0.591 T -58.7 -28.6 NA NA NA
ARG D:543 D:543 135.0 0.6 T -63.9 -23.7 NA NA NA
ARG E:543 E:543 134.0 0.596 T -58.7 -28.3 134.0 0.596 0.0 HOH
 8.800
 C
 O
ARG F:543 F:543 134.0 0.596 T -58.9 -27.9 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 ARG C:543 NA:NA DO NA DO DO DO NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 ARG A:543 A:543 125.0 0.556 T -62.7 -34.1 125.0 0.556 0.0 HOH
 9.060
 O
 O
ARG B:543 B:543 142.0 0.631 T -54.8 -37.5 NA NA NA
ARG C:543 C:543 132.0 0.587 S -45.9 -47.6 132.0 0.587 0.0 HOH
 7.731
 NH2
 O
ARG D:543 D:543 129.0 0.573 T -61.2 -36.5 NA NA NA
ARG E:543 E:543 55.0 NA S -90.6 37.3 NA NA NA
ARG F:543 F:543 140.0 0.622 T 9.4 -62.9 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ARG A:473 A:543 127.0 0.564 T -63.0 -16.4 127.0 0.564 0.0 HOH
 2.829
 O
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 ARG A:473 A:543 145.0 0.644 T -22.2 -50.1 145.0 0.644 0.0
ARG B:473 B:543 139.0 0.618 T -37.4 -22.9 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 ARG A:500 A:543 139.0 0.618 T -68.2 -25.1 139.0 0.618 0.0 HOH
 3.146
 NH2
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 ARG A:475 A:543 136.0 0.604 T -36.2 -41.0 136.0 0.604 0.0
ARG B:475 B:543 134.0 0.596 T -35.9 -41.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 ARG A:543 A:543 160.0 0.711 T -57.4 -26.1