Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230415148 . G A CCDS1582.1:NM_004481.3:c.1660Gtg>Atg_NP_004472.1:p.554V>M Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 VAL A:554 A:554 73.0 0.471 E -60.3 132.0 NA NA NA
VAL B:554 B:554 69.0 0.445 E -60.2 134.3 NA NA NA
VAL C:554 C:554 82.0 0.529 E -58.9 132.6 82.0 0.529 0.0
VAL D:554 D:554 81.0 0.523 E -59.5 131.7 NA NA NA
VAL E:554 E:554 83.0 0.535 E -60.6 132.0 NA NA NA
VAL F:554 F:554 83.0 0.535 E -59.3 132.2 83.0 0.535 0.0
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 VAL A:554 A:554 68.0 0.439 E -64.1 134.3 NA NA NA
VAL B:554 B:554 78.0 0.503 E -61.9 133.9 78.0 0.503 0.0 HOH
 7.695
 CG1
 O
VAL C:554 C:554 75.0 0.484 E -62.3 134.9 NA NA NA
VAL D:554 D:554 86.0 0.555 E -60.1 133.3 NA NA NA
VAL E:554 E:554 70.0 0.452 E -60.3 134.0 NA NA NA
VAL F:554 F:554 78.0 0.503 E -61.4 135.4 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 VAL A:554 A:554 72.0 0.465 E -63.9 127.4 72.0 0.465 0.0
VAL B:554 B:554 71.0 0.458 E -63.9 127.2 71.0 0.458 0.0
VAL D:554 D:554 73.0 0.471 E -63.3 127.8 NA NA NA
VAL E:554 E:554 77.0 0.497 E -64.6 127.5 NA NA NA
VAL F:554 NA:NA DO NA DO DO DO NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 VAL A:554 A:554 72.0 0.465 E -49.4 128.8 72.0 0.465 0.0 SO4
SO4
HOH
 9.977
9.577
2.755
 O
N
O
 O4
O3
O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 VAL A:554 A:554 69.0 0.445 E -53.4 128.8 69.0 0.445 0.0 SO4
SO4
HOH
 4.074
9.584
2.698
 CG1
O
O
 O1
O4
O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 VAL A:554 A:554 71.0 0.458 E -51.2 128.6 71.0 0.458 0.0 SO4
SO4
HOH
 9.408
9.062
2.587
 O
N
O
 O2
O2
O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 VAL A:554 A:554 65.0 0.419 E -55.4 132.1 NA NA NA
VAL B:554 B:554 82.0 0.529 E -59.1 133.7 NA NA NA
VAL C:554 C:554 65.0 0.419 E -46.5 133.1 65.0 0.419 0.0 HOH
 8.063
 O
 O
VAL D:554 D:554 185.0 1.0 -110.5 360.0 185.0 1.0 0.0 HOH
 8.111
 CG1
 O
VAL E:554 E:554 82.0 0.529 E -45.5 132.6 NA NA NA
VAL F:554 F:554 83.0 0.535 E -53.2 137.2 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 VAL A:554 A:554 78.0 0.503 E -64.5 132.8 NA NA NA
VAL B:554 B:554 87.0 0.561 E -64.3 132.2 NA NA NA
VAL C:554 C:554 79.0 0.51 E -64.5 133.0 NA NA NA
VAL D:554 D:554 80.0 0.516 E -63.5 132.6 NA NA NA
VAL E:554 E:554 78.0 0.503 E -64.6 133.1 78.0 0.503 0.0 HOH
 9.637
 N
 O
VAL F:554 F:554 78.0 0.503 E -64.5 132.7 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 VAL C:554 NA:NA DO NA DO DO DO NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 VAL A:554 A:554 84.0 0.542 E -72.4 127.8 84.0 0.542 0.0 HOH
 8.258
 O
 O
VAL B:554 B:554 75.0 0.484 -68.0 -24.9 NA NA NA
VAL C:554 C:554 84.0 0.542 -51.7 -26.1 84.0 0.542 0.0 HOH
 4.863
 O
 O
VAL D:554 D:554 65.0 0.419 E -75.3 135.1 NA NA NA
VAL E:554 E:554 79.0 NA E -67.3 133.1 NA NA NA
VAL F:554 F:554 71.0 0.458 E -75.7 132.2 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 VAL A:484 A:554 70.0 0.452 E -54.7 128.7 70.0 0.452 0.0 HOH
 2.629
 O
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 VAL A:484 A:554 76.0 0.49 E -78.8 127.1 76.0 0.49 0.0
VAL B:484 B:554 72.0 0.465 E -68.1 127.2 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 VAL A:511 A:554 71.0 0.458 E -58.4 131.3 71.0 0.458 0.0 HOH
 2.710
 O
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 VAL A:486 A:554 73.0 0.471 E -71.5 127.1 73.0 0.471 0.0
VAL B:486 B:554 76.0 0.49 E -70.6 126.3 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 VAL A:554 A:554 72.0 0.465 E -55.8 129.5