Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 230415158 . C A CCDS1582.1:NM_004481.3:c.1670cCg>cAg_NP_004472.1:p.557P>Q Homo sapiens polypeptide N-acetylgalactosaminyltransferase 2 (GALNT2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4d0t 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 PRO A:557 A:557 134.0 0.924 S -73.6 15.1 NA NA NA
PRO B:557 B:557 137.0 0.945 S -76.4 8.4 NA NA NA
PRO C:557 C:557 135.0 0.931 S -76.9 9.9 135.0 0.931 0.0
PRO D:557 D:557 138.0 0.952 S -76.4 11.1 NA NA NA
PRO E:557 E:557 139.0 0.959 S -75.7 15.6 NA NA NA
PRO F:557 NA:NA DO NA DO DO DO NA NA NA
4d0z 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 PRO A:557 A:557 144.0 0.993 S -82.7 53.8 NA NA NA
PRO B:557 B:557 147.0 1.0 S -90.5 52.8 147.0 1.0 0.0
PRO C:557 C:557 148.0 1.0 S -84.0 52.8 NA NA NA
PRO D:557 D:557 146.0 1.0 S -84.5 56.1 NA NA NA
PRO E:557 E:557 146.0 1.0 S -82.3 55.7 NA NA NA
PRO F:557 F:557 144.0 0.993 S -83.2 54.3 NA NA NA
4d11 1 Q10471 99.82 0.0 X-RAY
 2014-05-28 PRO A:557 A:557 136.0 0.938 S -71.5 15.8 136.0 0.938 0.0
PRO B:557 B:557 140.0 0.966 S -75.9 11.4 140.0 0.966 0.0
PRO D:557 D:557 140.0 0.966 S -75.3 13.0 NA NA NA
PRO E:557 E:557 139.0 0.959 S -71.1 13.7 NA NA NA
PRO F:557 NA:NA DO NA DO DO DO NA NA NA
5ajn 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 PRO A:557 A:557 146.0 1.0 S -89.8 80.0 146.0 1.0 0.0 SO4
HOH
 8.966
4.262
 O
CA
 O4
O
5ajo 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 PRO A:557 A:557 150.0 1.0 S -83.8 74.6 150.0 1.0 0.0 SO4
HOH
 8.922
3.000
 O
O
 O4
O
5ajp 1 Q10471 99.82 0.0 X-RAY
 2015-03-11 PRO A:557 A:557 147.0 1.0 S -82.6 72.7 147.0 1.0 0.0 SO4
HOH
 8.865
3.114
 O
O
 O2
O
5fv9 1 Q10471 99.82 0.0 X-RAY
 2016-03-09 PRO A:557 A:557 143.0 0.986 S -78.1 74.2 NA NA NA
PRO B:557 B:557 135.0 0.931 S -83.3 18.3 NA NA NA
PRO C:557 C:557 128.0 0.883 S -66.3 -16.6 128.0 0.883 0.0 HOH
 7.819
 O
 O
PRO D:557 NA:NA DO NA DO DO DO NA NA NA
PRO E:557 E:557 141.0 0.972 S -77.4 97.5 NA NA NA
PRO F:557 F:557 136.0 0.938 S -90.3 5.9 NA NA NA
5ndf 1 Q10471 99.82 0.0 X-RAY
 2017-11-01 PRO A:557 A:557 140.0 0.966 S -67.0 13.2 NA NA NA
PRO B:557 B:557 143.0 0.986 S -63.7 5.8 NA NA NA
PRO C:557 C:557 136.0 0.938 S -64.0 12.2 NA NA NA
PRO D:557 D:557 139.0 0.959 S -65.9 11.5 NA NA NA
PRO E:557 E:557 142.0 0.979 S -63.8 7.8 142.0 0.979 0.0
PRO F:557 F:557 131.0 0.903 S -64.9 9.8 NA NA NA
4d11 2 Q10471 99.65 0.0 X-RAY
 2014-05-28 PRO C:557 NA:NA DO NA DO DO DO NA NA NA
6nqt 1 Q10471 99.65 0.0 X-RAY
 2020-01-29 PRO A:557 A:557 132.0 0.91 S -75.4 40.1 132.0 0.91 0.0 HOH
 9.345
 N
 O
PRO B:557 B:557 130.0 0.897 S -73.2 62.0 NA NA NA
PRO C:557 C:557 145.0 1.0 S -65.7 69.7 145.0 1.0 0.0 HOH
 4.208
 CD
 O
PRO D:557 D:557 133.0 0.917 S -65.8 -45.3 NA NA NA
PRO E:557 NA:NA DO NA DO DO DO NA NA NA
PRO F:557 F:557 141.0 0.972 S -68.5 46.4 NA NA NA
2ffu 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 PRO A:487 A:557 140.0 0.966 S -70.4 6.7 140.0 0.966 0.0 HOH
 3.553
 C
 O
2ffv 1 Q10471 100.0 0.0 X-RAY
 2006-01-31 PRO A:487 A:557 126.0 0.869 S -63.3 -27.4 126.0 0.869 0.0
PRO B:487 B:557 127.0 0.876 S -61.9 -28.6 NA NA NA
6e7i 1 Q10471 99.6 0.0 X-RAY
 2020-01-29 PRO A:514 A:557 140.0 0.966 S -83.2 102.4 140.0 0.966 0.0 HOH
 3.905
 CA
 O
6egs 1 Q10471 99.6 0.0 X-RAY
 2018-04-11 PRO A:489 A:557 133.0 0.917 S -44.9 -33.5 133.0 0.917 0.0
PRO B:489 B:557 127.0 0.876 S -96.2 28.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q10471-f1 1 Q10471 100.0 0.0 PRO A:557 A:557 141.0 0.972 S -77.9 25.4