Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 33134600 . G A CCDS366.1:NM_005610.2:c.628Gtt>Att_NP_005601.1:p.210V>I Homo sapiens RB binding protein 4, chromatin remodeling factor (RBBP4), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6bw3 1 Q09028 100.0 0.0 X-RAY
 2017-12-27 VAL A:212 NA:NA DO NA DO DO DO NA NA NA
VAL C:212 A:210 40.0 0.258 S -89.4 119.9 NA NA NA
6bw4 1 Q09028 100.0 0.0 X-RAY
 2017-12-27 VAL A:212 NA:NA DO NA DO DO DO NA NA NA
VAL C:212 A:210 42.0 0.271 S -103.4 121.0 NA NA NA
2xu7 1 Q09028 100.0 0.0 X-RAY
 2010-11-03 VAL A:210 A:210 34.0 0.219 S -95.0 123.4 34.0 0.219 0.0 HOH
 3.846
 CG2
 O
VAL B:210 B:210 43.0 0.277 -102.4 121.6 NA NA NA
3gfc 1 Q09028 100.0 0.0 X-RAY
 2009-04-14 VAL A:210 A:210 30.0 0.194 S -75.5 128.3 30.0 0.194 0.0 HOH
 5.286
 CG1
 O
4pby 1 Q09028 100.0 0.0 X-RAY
 2014-06-11 VAL A:210 A:210 53.0 0.342 -122.8 109.0 53.0 0.342 0.0 HOH
 3.183
 O
 O
VAL B:210 B:210 41.0 0.265 -97.2 125.1 NA NA NA
4pbz 1 Q09028 100.0 0.0 X-RAY
 2014-06-11 VAL A:210 A:210 105.0 0.677 -68.2 136.0 105.0 0.677 0.0
4pc0 1 Q09028 100.0 0.0 X-RAY
 2014-06-11 VAL A:210 A:210 40.0 0.258 -80.1 128.4 40.0 0.258 0.0 HOH
 5.749
 CG1
 O
VAL B:210 B:210 38.0 0.245 -81.9 130.2 NA NA NA
4r7a 2 Q09028 100.0 0.0 X-RAY
 2015-01-14 VAL B:210 B:210 40.0 0.258 -69.6 135.3 40.0 0.258 0.0 HOH
 2.833
 O
 O
5fxy 1 Q09028 100.0 0.0 X-RAY
 2016-05-18 VAL A:210 A:210 63.0 0.406 -78.9 128.8 63.0 0.406 0.0
VAL C:210 C:210 161.0 1.0 60.2 360.0 NA NA NA
VAL E:210 E:210 135.0 0.871 -126.1 360.0 NA NA NA
VAL G:210 G:210 80.0 0.516 -138.3 116.8 NA NA NA
6c23 5 Q09028 100.0 0.0 EM
 2018-01-24 VAL F:210 N:210 59.0 0.381 -129.5 99.4 59.0 0.381 0.0
6c24 6 Q09028 100.0 0.0 EM
 2018-01-24 VAL G:210 N:210 54.0 0.348 -113.1 88.4 54.0 0.348 0.0
6g16 1 Q09028 100.0 0.0 X-RAY
 2018-06-13 VAL A:210 A:210 47.0 0.303 -74.4 143.9 47.0 0.303 0.0
VAL C:210 C:210 65.0 0.419 -71.5 143.5 NA NA NA
VAL E:210 E:210 64.0 0.413 -77.2 143.7 NA NA NA
VAL G:210 G:210 33.0 0.213 -108.4 -39.0 NA NA NA
6wkr 4 Q09028 100.0 0.0 EM
 2021-02-03 VAL D:210 N:210 36.0 0.232 -128.9 83.7 36.0 0.232 0.0
6zrd 1 Q09028 100.0 0.0 X-RAY
 2020-12-02 VAL A:210 A:210 33.0 0.213 S -83.7 146.8 33.0 0.213 0.0
VAL B:210 B:210 34.0 0.219 S -79.5 146.8 NA NA NA
7aoa 4 Q09028 100.0 0.0 EM
 2020-11-11 VAL F:210 F:210 54.0 0.348 -69.5 145.8 54.0 0.348 0.0
VAL G:210 G:210 54.0 0.348 -69.4 145.8 54.0 0.348 0.0
7kso 4 Q09028 100.0 0.0 EM
 2021-02-03 VAL D:210 D:210 41.0 0.265 S -75.7 148.4 41.0 0.265 0.0
7ksr 2 Q09028 100.0 0.0 EM
 2021-02-03 VAL B:210 D:210 40.0 0.258 S -72.6 148.8 40.0 0.258 0.0
7ktp 4 Q09028 100.0 0.0 EM
 2021-02-03 VAL D:210 D:210 41.0 0.265 S -73.6 148.5 41.0 0.265 0.0
5xxq 1 Q09028 100.0 0.0 X-RAY
 2018-08-08 VAL A:241 A:210 36.0 0.232 S -104.8 115.4 36.0 0.232 0.0 HOH
 2.513
 O
 O
VAL B:241 B:210 136.0 0.877 -67.7 115.9 NA NA NA
5y1u 1 Q09028 100.0 0.0 X-RAY
 2018-04-18 VAL A:241 A:241 25.0 0.161 S -100.6 126.4 25.0 0.161 0.0 HOH
 4.611
 N
 O
VAL B:241 B:241 32.0 0.206 S -102.5 118.4 NA NA NA
5vtb 1 Q09028 100.0 0.0 X-RAY
 2017-12-27 VAL A:217 A:210 21.0 0.135 S -73.7 138.2 21.0 0.135 0.0 HOH
 4.104
 CG1
 O
6zrc 1 Q09028 100.0 0.0 X-RAY
 2020-10-28 VAL A:212 A:210 96.0 0.619 -77.0 133.7 96.0 0.619 0.0
VAL D:212 B:210 105.0 0.677 -74.5 144.0 NA NA NA
7m40 1 Q09028 100.0 0.0 X-RAY
 2021-05-12 VAL A:228 A:210 43.0 0.277 S -50.7 136.5 43.0 0.277 0.0 HOH
 3.340
 N
 O
VAL B:228 B:210 35.0 0.226 -93.5 121.5 NA NA NA
5wai 1 Q09028 100.0 0.0 X-RAY
 2018-03-14 VAL A:224 A:210 63.0 0.406 -66.8 125.1 63.0 0.406 0.0
VAL E:224 E:210 106.0 0.684 -133.8 360.0 NA NA NA
5wak 1 Q09028 100.0 0.0 X-RAY
 2018-03-14 VAL A:224 A:210 63.0 0.406 73.8 38.9 63.0 0.406 0.0
6nq3 1 Q09028 100.0 0.0 X-RAY
 2020-01-29 VAL A:224 A:210 51.0 0.329 -130.1 126.0 51.0 0.329 0.0
VAL E:224 E:210 78.0 0.503 26.3 51.1 NA NA NA
5xwr 1 Q09028 100.0 0.0 X-RAY
 2018-07-11 VAL A:228 A:210 29.0 0.187 -107.0 106.2 29.0 0.187 0.0 HOH
 3.780
 CG2
 O
VAL B:228 B:210 110.0 NA -53.5 360.0 110.0 NA NA
3c99 1 Q24572 91.93 0.0 X-RAY
 2008-05-13 THR A:216 A:214 127.0 0.907 S -43.3 146.6 127.0 0.907 0.0
3c9c 1 Q24572 91.93 0.0 X-RAY
 2008-05-13 THR A:216 A:214 125.0 0.893 S -47.7 145.2 125.0 0.893 0.0
2xyi 1 Q24572 91.93 0.0 X-RAY
 2011-05-04 THR A:214 A:214 134.0 0.957 -65.6 122.5 134.0 0.957 0.0 PEG
HOH
 7.843
2.607
 N
O
 O4
O
2yb8 2 Q24572 91.91 0.0 X-RAY
 2011-05-18 THR B:218 B:214 132.0 0.943 -65.3 120.9 132.0 0.943 0.0 HOH
 3.999
 O
 O
2yba 1 Q24572 91.91 0.0 X-RAY
 2011-05-11 THR A:218 A:214 135.0 0.964 -62.9 116.8 135.0 0.964 0.0
THR B:218 B:214 132.0 0.943 -65.3 118.6 NA NA NA
3cfs 1 Q16576 91.02 0.0 X-RAY
 2008-06-10 GLY A:212 B:209 54.0 0.72 S 94.1 -168.0 54.0 0.72 0.0 HOH
 4.578
 O
 O
3cfv 1 Q16576 91.02 0.0 X-RAY
 2008-06-10 GLY A:212 B:209 58.0 0.773 S 74.2 -158.1 58.0 0.773 0.0 HOH
 3.268
 CA
 O
GLY C:212 A:209 49.0 0.653 S 68.0 -156.7 NA NA NA
7m3x 1 Q16576 91.15 0.0 X-RAY
 2021-05-05 GLY A:205 A:209 71.0 0.947 -33.7 128.1 71.0 0.947 0.0 HOH
 3.528
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q09028-f1 1 Q09028 100.0 0.0 VAL A:210 A:210 137.0 0.884 -64.5 118.0
af-q16576-f1 1 Q16576 89.2 0.0 GLY A:209 A:209 32.0 0.427 77.3 154.7