Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 33134852 . A C CCDS366.1:NM_005610.2:c.782aAt>aCt_NP_005601.1:p.261N>T Homo sapiens RB binding protein 4, chromatin remodeling factor (RBBP4), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6bw3 1 Q09028 100.0 0.0 X-RAY
 2017-12-27 ASN A:263 C:261 81.0 0.506 -98.0 100.4 81.0 0.506 0.0
ASN C:263 A:261 81.0 0.506 -97.6 101.2 NA NA NA
6bw4 1 Q09028 100.0 0.0 X-RAY
 2017-12-27 ASN A:263 C:261 80.0 0.5 -97.0 104.2 80.0 0.5 0.0
ASN C:263 A:261 80.0 0.5 -97.6 105.9 NA NA NA
2xu7 1 Q09028 100.0 0.0 X-RAY
 2010-11-03 ASN A:261 A:261 68.0 0.425 -97.6 112.4 68.0 0.425 0.0 HOH
 2.158
 O
 O
ASN B:261 B:261 79.0 0.494 -85.8 104.6 NA NA NA
3gfc 1 Q09028 100.0 0.0 X-RAY
 2009-04-14 ASN A:261 A:261 86.0 0.537 -80.4 93.0 86.0 0.537 0.0 HOH
 5.976
 OD1
 O
4pby 1 Q09028 100.0 0.0 X-RAY
 2014-06-11 ASN A:261 A:261 62.0 0.388 -127.3 114.8 62.0 0.388 0.0 HOH
 2.961
 O
 O
ASN B:261 B:261 66.0 0.412 -89.9 107.7 NA NA NA
4pbz 1 Q09028 100.0 0.0 X-RAY
 2014-06-11 ASN A:261 A:261 70.0 0.438 -82.6 111.9 70.0 0.438 0.0
4pc0 1 Q09028 100.0 0.0 X-RAY
 2014-06-11 ASN A:261 A:261 58.0 0.362 -105.7 112.6 58.0 0.362 0.0 HOH
 2.755
 O
 O
ASN B:261 B:261 61.0 0.381 -105.2 115.1 NA NA NA
4r7a 2 Q09028 100.0 0.0 X-RAY
 2015-01-14 ASN B:261 B:261 73.0 0.456 -93.1 103.2 73.0 0.456 0.0 GOL
HOH
 3.098
2.615
 O
O
 O2
O
5fxy 1 Q09028 100.0 0.0 X-RAY
 2016-05-18 ASN A:261 A:261 94.0 0.588 -72.2 101.7 94.0 0.588 0.0
ASN C:261 C:261 70.0 0.438 -74.5 104.2 NA NA NA
ASN E:261 E:261 76.0 0.475 -77.6 100.5 NA NA NA
ASN G:261 G:261 63.0 0.394 -86.5 144.9 NA NA NA
6c23 5 Q09028 100.0 0.0 EM
 2018-01-24 ASN F:261 N:261 75.0 0.469 -132.4 106.8 75.0 0.469 0.0
6c24 6 Q09028 100.0 0.0 EM
 2018-01-24 ASN G:261 N:261 82.0 0.512 -138.4 95.0 82.0 0.512 0.0
6g16 1 Q09028 100.0 0.0 X-RAY
 2018-06-13 ASN A:261 A:261 76.0 0.475 -89.5 105.3 76.0 0.475 0.0
ASN C:261 C:261 81.0 0.506 -88.5 108.2 NA NA NA
ASN E:261 E:261 73.0 0.456 -90.4 103.9 NA NA NA
ASN G:261 G:261 74.0 0.463 -88.1 104.6 NA NA NA
6wkr 4 Q09028 100.0 0.0 EM
 2021-02-03 ASN D:261 N:261 95.0 0.594 -152.0 103.3 95.0 0.594 0.0
6zrd 1 Q09028 100.0 0.0 X-RAY
 2020-12-02 ASN A:261 A:261 73.0 0.456 -81.2 103.1 73.0 0.456 0.0
ASN B:261 B:261 76.0 0.475 -80.5 101.8 NA NA NA
7aoa 4 Q09028 100.0 0.0 EM
 2020-11-11 ASN F:261 F:261 96.0 0.6 -76.0 107.4 96.0 0.6 0.0
ASN G:261 G:261 96.0 0.6 -76.0 107.4 96.0 0.6 0.0
7kso 4 Q09028 100.0 0.0 EM
 2021-02-03 ASN D:261 D:261 81.0 0.506 -131.3 109.6 81.0 0.506 0.0
7ksr 2 Q09028 100.0 0.0 EM
 2021-02-03 ASN B:261 D:261 76.0 0.475 -122.1 112.9 76.0 0.475 0.0
7ktp 4 Q09028 100.0 0.0 EM
 2021-02-03 ASN D:261 D:261 78.0 0.487 -130.7 111.0 78.0 0.487 0.0
5xxq 1 Q09028 100.0 0.0 X-RAY
 2018-08-08 ASN A:292 A:261 64.0 0.4 -93.5 109.6 64.0 0.4 0.0 HOH
 2.404
 O
 O
ASN B:292 B:261 73.0 0.456 -106.3 98.0 NA NA NA
5y1u 1 Q09028 100.0 0.0 X-RAY
 2018-04-18 ASN A:292 A:292 74.0 0.463 -89.9 102.5 74.0 0.463 0.0 HOH
 2.521
 O
 O
ASN B:292 B:292 67.0 0.419 -92.7 105.8 NA NA NA
5vtb 1 Q09028 100.0 0.0 X-RAY
 2017-12-27 ASN A:268 A:261 77.0 0.481 -102.4 104.5 77.0 0.481 0.0 HOH
 3.005
 O
 O
6zrc 1 Q09028 100.0 0.0 X-RAY
 2020-10-28 ASN A:263 A:261 77.0 0.481 -98.5 106.4 77.0 0.481 0.0
ASN D:263 B:261 78.0 0.487 -97.1 107.7 NA NA NA
7m40 1 Q09028 100.0 0.0 X-RAY
 2021-05-12 ASN A:279 A:261 76.0 0.475 -90.0 100.8 76.0 0.475 0.0 HOH
 2.521
 O
 O
ASN B:279 B:261 82.0 0.512 -101.3 95.8 NA NA NA
5wai 1 Q09028 100.0 0.0 X-RAY
 2018-03-14 ASN A:275 A:261 82.0 0.512 -108.9 103.3 82.0 0.512 0.0
ASN E:275 E:261 72.0 0.45 -78.3 117.9 NA NA NA
5wak 1 Q09028 100.0 0.0 X-RAY
 2018-03-14 ASN A:275 A:261 82.0 0.512 -85.7 109.1 82.0 0.512 0.0
6nq3 1 Q09028 100.0 0.0 X-RAY
 2020-01-29 ASN A:275 A:261 60.0 0.375 -117.9 121.5 60.0 0.375 0.0
ASN E:275 E:261 69.0 0.431 -99.9 116.7 NA NA NA
5xwr 1 Q09028 100.0 0.0 X-RAY
 2018-07-11 ASN A:279 A:261 81.0 0.506 -95.6 118.1 81.0 0.506 0.0 HOH
 3.346
 O
 O
ASN B:279 B:261 70.0 0.438 -100.8 120.0 70.0 0.438 0.0 HOH
 3.690
 N
 O
3c99 1 Q24572 91.93 0.0 X-RAY
 2008-05-13 ASN A:267 A:265 61.0 0.381 -82.4 113.3 61.0 0.381 0.0
3c9c 1 Q24572 91.93 0.0 X-RAY
 2008-05-13 ASN A:267 A:265 62.0 0.388 -81.4 121.0 62.0 0.388 0.0
2xyi 1 Q24572 91.93 0.0 X-RAY
 2011-05-04 ASN A:265 A:265 85.0 0.531 -87.8 117.3 85.0 0.531 0.0 HOH
 2.485
 O
 O
2yb8 2 Q24572 91.91 0.0 X-RAY
 2011-05-18 ASN B:269 B:265 88.0 0.55 -95.0 108.4 88.0 0.55 0.0 HOH
 2.556
 O
 O
2yba 1 Q24572 91.91 0.0 X-RAY
 2011-05-11 ASN A:269 A:265 90.0 0.562 -90.6 104.3 90.0 0.562 0.0 HOH
 6.002
 N
 O
ASN B:269 B:265 91.0 0.569 -91.5 106.3 NA NA NA
3cfs 1 Q16576 91.02 0.0 X-RAY
 2008-06-10 THR A:263 B:260 53.0 0.379 -112.9 142.1 53.0 0.379 0.0 HOH
 4.770
 O
 O
3cfv 1 Q16576 91.02 0.0 X-RAY
 2008-06-10 THR A:263 B:260 57.0 0.407 -151.9 115.4 57.0 0.407 0.0
THR C:263 A:260 52.0 0.371 -134.6 131.6 NA NA NA
7m3x 1 Q16576 91.15 0.0 X-RAY
 2021-05-05 THR A:256 A:260 38.0 0.271 -116.3 144.9 38.0 0.271 0.0 HOH
 2.648
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q09028-f1 1 Q09028 100.0 0.0 ASN A:261 A:261 73.0 0.456 -106.9 109.7
af-q16576-f1 1 Q16576 89.2 0.0 THR A:260 A:260 67.0 0.479 -121.0 127.8