Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 36605334 . T A CCDS404.1:NM_014408.4:c.227gAt>gTt_NP_055223.1:p.76D>V Homo sapiens trafficking protein particle complex 3 (TRAPPC3), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2cfh 1 O43617 100.0 2e-134 X-RAY
 2006-07-12 ASP A:90 A:76 74.0 0.493 H -65.7 -45.7 74.0 0.493 0.0 PLM
HOH
 7.600
5.391
 C
OD1
 C4
O
ASP B:90 B:76 74.0 0.493 H -64.9 -46.8 NA NA NA
1sz7 1 O43617 100.0 1e-133 X-RAY
 2005-01-18 ASP A:85 A:76 48.0 0.32 H -59.6 -44.8 48.0 0.32 0.0 PLM
HOH
 7.227
2.900
 C
OD2
 C4
O
3kxc 1 O43617 99.44 2e-133 X-RAY
 2010-04-21 ASP A:90 A:76 76.0 0.507 H -60.4 -43.5 76.0 0.507 0.0 PLM
HOH
 7.378
5.031
 C
OD1
 C4
O
2pwn 1 O55013 98.33 3e-133 X-RAY
 2007-05-29 ASP A:88 A:76 62.0 0.413 H -63.2 -44.1 62.0 0.413 0.0 MYR
HOH
 7.649
3.740
 C
OD1
 C6
O
2j3r 1 O55013 98.33 4e-133 X-RAY
 2006-11-27 ASP A:78 A:76 68.0 0.453 H -65.9 -53.0 68.0 0.453 0.0 PLM
 7.893
 C
 C3
2j3t 1 O55013 98.33 4e-133 X-RAY
 2006-11-22 ASP A:78 A:76 59.0 0.393 H -64.6 -48.9 59.0 0.393 0.0 PLM
HOH
 7.728
9.826
 C
OD1
 C3
O
2j3w 3 O55013 98.33 4e-133 X-RAY
 2006-11-27 ASP D:78 D:76 67.0 0.447 H -53.0 -47.9 67.0 0.447 0.0 PLM
HOH
 7.990
5.764
 C
OD1
 C5
O
ASP E:78 E:76 62.0 0.413 H -61.6 -50.8 NA NA NA
1wc8 1 O55013 98.33 5e-133 X-RAY
 2004-12-13 ASP A:76 A:76 69.0 0.46 H -56.6 -46.4 69.0 0.46 0.0 MYR
HOH
 7.241
2.315
 C
OD1
 C2
O
1wc9 1 O55013 98.18 5e-121 X-RAY
 2004-12-13 ASP A:69 A:76 56.0 0.373 H -59.8 -44.1 56.0 0.373 0.0 MYR
HOH
 7.177
2.909
 C
OD2
 C4
O
2c0j 1 O43617 98.14 1e-117 X-RAY
 2006-02-07 ASP A:62 A:76 59.0 0.393 H -68.0 -35.4 59.0 0.393 0.0 PLM
HOH
 7.762
2.584
 C
OD1
 C4
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o43617-f1 1 O43617 100.0 8e-135 ASP A:76 A:76 67.0 0.447 H -60.3 -45.2