Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 36605376 . C A CCDS404.1:NM_014408.4:c.185cGg>cTg_NP_055223.1:p.62R>L Homo sapiens trafficking protein particle complex 3 (TRAPPC3), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2cfh 1 O43617 100.0 2e-134 X-RAY
 2006-07-12 ARG A:76 A:62 136.0 0.604 H -84.2 -46.9 100.0 0.444 0.16 C:Q86SZ2:0.16
 PLM
 9.461
 NH1
 CD
ARG B:76 B:62 136.0 0.604 H -85.5 -47.9 NA NA NA
1sz7 1 O43617 100.0 1e-133 X-RAY
 2005-01-18 ARG A:71 A:62 83.0 NA H -96.2 -8.6 83.0 NA NA PLM
HOH
 9.757
5.885
 CB
N
 C9
O
3kxc 1 O43617 99.44 2e-133 X-RAY
 2010-04-21 ARG A:76 A:62 145.0 0.644 H -97.7 -19.1 107.0 0.476 0.168 B:Q86SZ2:0.169
 PLM
HOH
 9.647
3.466
 NH2
NE
 CD
O
2pwn 1 O55013 98.33 3e-133 X-RAY
 2007-05-29 ARG A:74 A:62 122.0 0.542 T -109.4 19.1 101.0 0.449 0.093 A:O55013:0.093
 HOH
 2.824
 O
 O
2j3r 1 O55013 98.33 4e-133 X-RAY
 2006-11-27 ARG A:64 A:62 107.0 0.476 T -88.8 29.5 48.0 0.213 0.263 B:Q6DGL5:0.262
2j3t 1 O55013 98.33 4e-133 X-RAY
 2006-11-22 ARG A:64 A:62 135.0 0.6 H -98.3 -30.4 100.0 0.444 0.156 B:O75865:0.142
C:Q5NCF2:0.009
 PLM
HOH
 9.841
3.591
 NH1
NH2
 CE
O
2j3w 3 O55013 98.33 4e-133 X-RAY
 2006-11-27 ARG D:64 D:62 169.0 0.751 T -125.2 5.1 121.0 0.538 0.213 F:Q6DGL5:0.213
ARG E:64 E:62 143.0 0.636 T -80.5 25.3 NA NA NA
1wc8 1 O55013 98.33 5e-133 X-RAY
 2004-12-13 ARG A:62 A:62 88.0 0.391 T -126.3 1.0 76.0 0.338 0.053 A:O55013:0.053
 MYR
HOH
 9.860
3.223
 NH1
CD
 C9
O
1wc9 1 O55013 98.18 5e-121 X-RAY
 2004-12-13 ARG A:55 A:62 127.0 0.564 T -103.3 10.5 96.0 0.427 0.137 A:O55013:0.138
 MYR
HOH
 9.911
3.040
 CB
O
 C9
O
2c0j 1 O43617 98.14 1e-117 X-RAY
 2006-02-07 ARG A:48 A:62 143.0 0.636 H -94.7 -9.9 105.0 0.467 0.169 B:O75865:0.169
 PLM
HOH
 9.970
3.468
 NH1
NH1
 CC
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o43617-f1 1 O43617 100.0 8e-135 ARG A:62 A:62 88.0 0.391 H -114.9 -22.7