Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 40562797 . C A CCDS447.1:NM_000310.3:c.114tgG>tgT_NP_000301.1:p.38W>C Homo sapiens palmitoyl-protein thioesterase 1 (PPT1), transcript variant 1, mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3gro 1 P50897 99.65 0.0 X-RAY
 2009-04-07 TRP A:18 A:38 2.0 0.008 E -121.3 116.5 2.0 0.008 0.0 HOH
 3.134
 NE1
 O
TRP B:18 B:38 1.0 0.004 E -123.1 113.8 1.0 0.004 0.0 HOH
 5.502
 O
 O
1eh5 1 P45478 94.24 0.0 X-RAY
 2000-04-26 TRP A:11 A:38 2.0 0.008 E -133.4 114.8 2.0 0.008 0.0 PLM
HOH
 8.346
3.235
 O
NE1
 O1
O
1ei9 1 P45478 94.24 0.0 X-RAY
 2000-04-26 TRP A:11 A:38 3.0 0.012 E -127.9 113.4 3.0 0.012 0.0 HOH
 2.892
 NE1
 O
1exw 1 P45478 94.24 0.0 X-RAY
 2000-08-02 TRP A:11 A:38 2.0 0.008 E -132.8 112.6 2.0 0.008 0.0 HDS
HOH
 8.004
2.948
 O
NE1
 O1S
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p50897-f1 1 P50897 100.0 0.0 TRP A:38 A:38 2.0 0.008 E -122.3 117.8