Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 52385700 . T A CCDS560.1:NM_002867.3:c.559Atg>Ttg_NP_002858.2:p.187M>L Homo sapiens RAB3B, member RAS oncogene family (RAB3B), mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6y7g 1 Q96E17 80.82 1e-136 X-RAY
 2021-03-31 MET A:195 A:195 74.0 0.4 H -58.7 -42.1 74.0 0.4 0.0 HOH
 5.909
 N
 O
MET B:195 B:195 62.0 0.335 H -74.5 -15.1 NA NA NA
3dz8 1 P20337 100.0 1e-129 X-RAY
 2008-08-12 MET A:188 A:187 156.0 0.843 -78.9 360.0 156.0 0.843 0.0
1zbd 1 P63012 80.1 4e-118 X-RAY
 1999-04-02 MSE A:173 A:187 64.0 0.346 H -65.3 -53.2 13.0 0.07 0.276 B:P47709:0.276
 HOH
 5.014
 SE
 O
4rkf 1 P25228 81.48 7e-113 X-RAY
 2014-12-10 MET A:188 A:186 144.0 0.778 -72.5 360.0 144.0 0.778 0.0 HOH
 3.883
 C
 O
MET B:188 B:186 96.0 0.519 H -58.9 -34.8 NA NA NA
2gf9 1 O95716 85.88 1e-110 X-RAY
 2006-05-02 MET A:187 A:187 87.0 0.47 H -60.8 -31.1 87.0 0.47 0.0 HOH
 2.629
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p20337-f1 1 P20337 100.0 1e-166 MET A:187 A:187 47.0 0.254 H -70.3 -37.3
af-q96e17-f1 1 Q96E17 80.82 5e-137 MET A:195 A:195 52.0 0.281 H -66.9 -37.7