Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 52385727 . G A CCDS560.1:NM_002867.3:c.532Cgc>Tgc_NP_002858.2:p.178R>C Homo sapiens RAB3B, member RAS oncogene family (RAB3B), mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6y7g 1 Q96E17 80.82 1e-136 X-RAY
 2021-03-31 ARG A:186 A:186 76.0 0.338 H -61.2 -39.1 76.0 0.338 0.0 HOH
 3.747
 NE
 O
ARG B:186 B:186 78.0 0.347 H -65.0 -32.6 NA NA NA
3dz8 1 P20337 100.0 1e-129 X-RAY
 2008-08-12 ARG A:179 A:178 34.0 NA H -64.0 -38.0 34.0 NA NA HOH
 6.965
 N
 O
1zbd 1 P63012 80.1 4e-118 X-RAY
 1999-04-02 ARG A:164 A:178 71.0 0.316 H -75.2 -36.5 71.0 0.316 0.0 HOH
 3.870
 CB
 O
4rkf 1 P25228 81.48 7e-113 X-RAY
 2014-12-10 ARG A:179 A:177 80.0 0.356 H -67.4 -39.7 80.0 0.356 0.0 HOH
 2.705
 NH2
 O
ARG B:179 B:177 79.0 0.351 H -65.0 -40.7 NA NA NA
3rab 1 P63012 86.39 7e-112 X-RAY
 1999-04-16 ARG A:161 A:178 78.0 0.347 H -69.1 -41.0 78.0 0.347 0.0 HOH
 3.076
 NH2
 O
2gf9 1 O95716 85.88 1e-110 X-RAY
 2006-05-02 ARG A:178 A:178 87.0 0.387 H -61.5 -44.7 87.0 0.387 0.0 HOH
 3.083
 NE
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p20337-f1 1 P20337 100.0 1e-166 ARG A:178 A:178 83.0 0.369 H -59.6 -41.2
af-q96e17-f1 1 Q96E17 80.82 5e-137 ARG A:186 A:186 79.0 0.351 H -62.7 -41.3