Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 52399041 . C A CCDS560.1:NM_002867.3:c.421Gaa>Taa_NP_002858.2:p.141E>* Homo sapiens RAB3B, member RAS oncogene family (RAB3B), mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6y7g 1 Q96E17 80.82 1e-136 X-RAY
 2021-03-31 ASP A:149 A:149 156.0 1.0 G -68.2 -32.9 156.0 1.0 0.0 GDP
BTB
HOH
 9.768
3.320
8.902
 N
N
O
 N2
O3
O
ASP B:149 B:149 156.0 1.0 T -58.7 -40.4 NA NA NA
3dz8 1 P20337 100.0 1e-129 X-RAY
 2008-08-12 GLU A:142 A:141 143.0 0.753 G -61.3 -21.1 143.0 0.753 0.0 GDP
HOH
 7.442
5.974
 OE2
OE2
 N2
O
1zbd 1 P63012 80.1 4e-118 X-RAY
 1999-04-02 ASP A:127 A:141 141.0 0.94 T -77.3 -33.9 141.0 0.94 0.0 GTP
HOH
 9.347
6.711
 OD2
OD2
 N2
O
4rkf 1 P25228 81.48 7e-113 X-RAY
 2014-12-10 ASP A:142 A:140 156.0 1.0 G -68.0 -18.2 156.0 1.0 0.0 HOH
 3.856
 O
 O
ASP B:142 B:140 156.0 1.0 G -64.8 -21.8 NA NA NA
3rab 1 P63012 86.39 7e-112 X-RAY
 1999-04-16 ASP A:124 A:141 156.0 1.0 G -69.4 -24.9 156.0 1.0 0.0 GNP
HOH
 9.930
3.297
 N
N
 N2
O
2gf9 1 O95716 85.88 1e-110 X-RAY
 2006-05-02 ASP A:141 A:141 164.0 1.0 G -64.1 -16.9 164.0 1.0 0.0 HOH
 3.421
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p20337-f1 1 P20337 100.0 1e-166 GLU A:141 A:141 203.0 1.0 G -66.3 -23.7
af-q96e17-f1 1 Q96E17 80.82 5e-137 ASP A:149 A:149 172.0 1.0 G -65.8 -20.6