Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 52402981 . T A CCDS560.1:NM_002867.3:c.332aAt>aTt_NP_002858.2:p.111N>I Homo sapiens RAB3B, member RAS oncogene family (RAB3B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6y7g 1 Q96E17 80.82 1e-136 X-RAY
 2021-03-31 ASN A:119 A:119 80.0 0.5 H -70.0 -31.6 80.0 0.5 0.0 HOH
 3.197
 ND2
 O
ASN B:119 B:119 71.0 0.444 H -69.6 -33.7 NA NA NA
3dz8 1 P20337 100.0 1e-129 X-RAY
 2008-08-12 ASN A:112 A:111 96.0 0.6 H -67.6 -23.5 96.0 0.6 0.0 HOH
 6.561
 N
 O
1zbd 1 P63012 80.1 4e-118 X-RAY
 1999-04-02 ASN A:97 A:111 80.0 0.5 H -71.7 -27.1 80.0 0.5 0.0 HOH
 2.743
 O
 O
4rkf 1 P25228 81.48 7e-113 X-RAY
 2014-12-10 ASN A:112 A:110 98.0 0.613 H -61.9 -26.2 98.0 0.613 0.0 1PE
HOH
 7.139
2.495
 C
OD1
 C14
O
ASN B:112 B:110 90.0 0.562 H -61.0 -27.8 NA NA NA
3rab 1 P63012 86.39 7e-112 X-RAY
 1999-04-16 ASN A:94 A:111 98.0 0.613 H -64.7 -19.3 98.0 0.613 0.0 HOH
 2.680
 O
 O
2gf9 1 O95716 85.88 1e-110 X-RAY
 2006-05-02 ALA A:111 A:111 55.0 0.478 H -59.3 -31.6 55.0 0.478 0.0 HOH
 2.720
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p20337-f1 1 P20337 100.0 1e-166 ASN A:111 A:111 88.0 0.55 H -61.4 -33.3
af-q96e17-f1 1 Q96E17 80.82 5e-137 ASN A:119 A:119 85.0 0.531 H -63.6 -32.3