Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 52442582 . G A CCDS560.1:NM_002867.3:c.208Cgg>Tgg_NP_002858.2:p.70R>W Homo sapiens RAB3B, member RAS oncogene family (RAB3B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6y7g 1 Q96E17 80.82 1e-136 X-RAY
 2021-03-31 ARG A:78 A:78 86.0 0.382 E -106.7 120.4 86.0 0.382 0.0 HOH
 7.331
 O
 O
ARG B:78 B:78 98.0 0.436 E -101.2 123.0 NA NA NA
3dz8 1 P20337 100.0 1e-129 X-RAY
 2008-08-12 ARG A:71 A:70 80.0 0.356 T 60.9 49.4 80.0 0.356 0.0 UNX
HOH
 7.395
8.282
 N
O
 UNK
O
1zbd 1 P63012 80.1 4e-118 X-RAY
 1999-04-02 ARG A:56 A:70 96.0 0.427 E -86.8 117.0 95.0 0.422 0.005 B:P47709:0.004
 HOH
 2.823
 NE
 O
4rkf 1 P25228 81.48 7e-113 X-RAY
 2014-12-10 ARG A:71 A:69 86.0 0.382 E -99.6 117.3 86.0 0.382 0.0 HOH
 3.775
 NH2
 O
ARG B:71 B:69 145.0 0.644 E -84.6 121.0 NA NA NA
3rab 1 P63012 86.39 7e-112 X-RAY
 1999-04-16 ARG A:53 A:70 99.0 0.44 E -101.1 112.8 99.0 0.44 0.0 HOH
 5.414
 CB
 O
2gf9 1 O95716 85.88 1e-110 X-RAY
 2006-05-02 ARG A:70 A:70 72.0 0.32 E -98.4 108.3 72.0 0.32 0.0 UNX
HOH
 7.910
2.956
 N
NH1
 UNK
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p20337-f1 1 P20337 100.0 1e-166 ARG A:70 A:70 50.0 0.222 E -85.8 108.1
af-q96e17-f1 1 Q96E17 80.82 5e-137 ARG A:78 A:78 41.0 0.182 E -88.2 111.6