Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 52442668 . C A CCDS560.1:NM_002867.3:c.122cGc>cTc_NP_002858.2:p.41R>L Homo sapiens RAB3B, member RAS oncogene family (RAB3B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6y7g 1 Q96E17 80.82 1e-136 X-RAY
 2021-03-31 ARG A:49 A:49 36.0 0.16 H -70.1 -36.2 36.0 0.16 0.0 GDP
HOH
 7.904
3.547
 NE
N
 O6
O
ARG B:49 B:49 36.0 0.16 H -64.8 -46.9 NA NA NA
3dz8 1 P20337 100.0 1e-129 X-RAY
 2008-08-12 ARG A:42 A:41 81.0 0.36 H -64.7 -41.0 81.0 0.36 0.0 GDP
UNX
UNX
UNX
HOH
 7.915
6.681
9.923
7.279
6.179
 CB
O
O
O
CG
 O6
UNK
UNK
UNK
O
1zbd 1 P63012 80.1 4e-118 X-RAY
 1999-04-02 ARG A:27 A:41 35.0 0.156 H -79.7 -30.6 35.0 0.156 0.0 GTP
HOH
 7.900
3.473
 CB
NH2
 N7
O
4rkf 1 P25228 81.48 7e-113 X-RAY
 2014-12-10 ARG A:42 A:40 34.0 0.151 H -69.3 -43.5 34.0 0.151 0.0 GNP
HOH
 7.927
2.903
 NE
NH1
 O6
O
ARG B:42 B:40 34.0 0.151 H -61.6 -49.0 NA NA NA
3rab 1 P63012 86.39 7e-112 X-RAY
 1999-04-16 ARG A:24 A:41 38.0 0.169 H -69.1 -48.0 38.0 0.169 0.0 GNP
HOH
 7.990
2.875
 NE
O
 O6
O
2gf9 1 O95716 85.88 1e-110 X-RAY
 2006-05-02 ARG A:41 A:41 34.0 0.151 H -67.4 -46.1 34.0 0.151 0.0 UNX
GDP
HOH
 5.908
7.920
3.090
 NH1
CB
NH1
 UNK
N7
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p20337-f1 1 P20337 100.0 1e-166 ARG A:41 A:41 39.0 0.173 H -60.7 -44.7
af-q96e17-f1 1 Q96E17 80.82 5e-137 ARG A:49 A:49 40.0 0.178 H -61.2 -46.2