Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr1 53699309 . T A CCDS577.1:NM_002370.3:c.163Agc>Tgc_NP_002361.1:p.55S>C Homo sapiens mago homolog, exon junction complex core component (MAGOH), mRNA.
pdb_id: 
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label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2hyi 2 P61326 100.0 3e-106 X-RAY
 2006-08-15 SER C:55 A:55 66.0 0.574 H -57.6 -37.0 15.0 0.13 0.444 D:Q9Y5S9:0.443
 HOH
 4.993
 O
 O
SER G:55 G:55 59.0 0.513 H -58.1 -34.5 NA NA NA
2j0q 2 P61326 100.0 3e-106 X-RAY
 2006-08-30 SER C:55 C:55 70.0 0.609 H -61.9 -34.9 15.0 0.13 0.479 D:Q9Y5S9:0.478
SER F:55 F:55 68.0 0.591 H -62.5 -36.4 NA NA NA
2j0s 2 P61326 100.0 3e-106 X-RAY
 2006-09-06 SER B:55 C:55 71.0 0.617 H -54.7 -38.4 13.0 0.113 0.504 C:Q9Y5S9:0.504
 HOH
 2.760
 O
 O
2xb2 2 P61326 100.0 3e-106 X-RAY
 2010-05-12 SER B:55 C:55 58.0 0.504 H -61.7 -18.9 NA NA NA
SER L:55 Y:55 60.0 0.522 H -60.5 -18.5 8.0 0.07 0.452 M:Q9Y5S9:0.452
3ex7 1 P61326 100.0 3e-106 X-RAY
 2008-12-09 SER A:55 A:55 59.0 0.513 H -65.0 -34.4 5.0 0.043 0.47 B:Q9Y5S9:0.47
 HOH
 4.751
 O
 O
SER E:55 E:55 74.0 0.643 H -61.3 -32.1 NA NA NA
7a5p 34 P61326 100.0 3e-106 EM
 2020-10-14 SER RA:55 v:57 75.0 NA H -63.1 -35.0 43.0 NA NA SA:Q9Y5S9:NA
5xjc 38 Q96A72 98.63 4e-105 EM
 2017-07-05 SER VA:57 v:57 67.0 0.583 H -57.6 -37.0 16.0 0.139 0.444 WA:Q9Y5S9:0.443
5yzg 30 Q96A72 98.63 4e-105 EM
 2018-08-08 SER GA:57 v:57 66.0 0.574 H -57.6 -36.9 14.0 0.122 0.452 HA:Q9Y5S9:0.452
6icz 1 Q96A72 98.63 4e-105 EM
 2019-03-13 SER A:57 v:55 77.0 NA H -57.6 -36.9 47.0 NA NA B:Q9Y5S9:NA
1p27 1 P61326 100.0 9e-105 X-RAY
 2003-08-19 SER A:54 A:55 80.0 0.696 H -59.6 -39.5 17.0 0.148 0.548 B:Q9Y5S9:0.548
 HOH
 2.774
 OG
 O
SER C:54 C:55 74.0 0.643 H -62.1 -33.6 19.0 0.165 0.478 D:Q9Y5S9:0.478
 HOH
 2.734
 O
 O
6qdv 6 Q96A72 100.0 1e-104 EM
 2019-02-20 SER F:53 9:57 67.0 0.583 H -57.7 -36.9 15.0 0.13 0.453 E:Q9Y5S9:0.452
1oo0 1 P49028 91.61 7e-96 X-RAY
 2003-05-27 SER A:56 A:56 74.0 0.643 H -65.5 -30.6 11.0 0.096 0.547 B:Q9V535:0.548
 GOL
HOH
 6.187
2.742
 CB
O
 O3
O
1rk8 2 P49028 91.61 7e-96 X-RAY
 2004-04-13 SER B:56 B:56 61.0 0.53 H -65.0 -32.9 3.0 0.026 0.504 A:Q9V535:0.504
 HOH
 2.786
 O
 O
2x1g 2 P49028 91.61 7e-96 X-RAY
 2010-02-16 SER B:56 B:56 66.0 0.574 H -48.7 -37.5 8.0 0.07 0.504 A:Q9V535:0.504
SER D:56 D:56 67.0 0.583 H -48.6 -37.6 NA NA NA
1hl6 2 P49028 91.61 9e-96 X-RAY
 2003-05-08 SER B:56 B:56 69.0 0.6 H -67.9 -29.4 11.0 0.096 0.504 A:Q9V535:0.504
 HOH
 6.268
 OG
 O
SER D:56 D:56 60.0 0.522 H -59.4 -27.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p61326-f1 1 P61326 100.0 1e-106 SER A:55 A:55 59.0 0.513 H -63.9 -28.8
af-q96a72-f1 1 Q96A72 98.63 2e-105 SER A:57 A:57 70.0 0.609 H -63.0 -29.6