Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 55518452 | . | G | A | CCDS603.1:NM_174936.3:c.787Ggc>Agc_NP_777596.2:p.263G>S | Homo sapiens proprotein convertase subtilisin/kexin type 9 (PCSK9), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
2p4e | 1 | Q8NBP7 | 99.71 | 0.0 |
X-RAY |
2007-04-10 | GLY | A:263 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
GLY | B:263 | A:263 | 0.0 | 0.0 | H | -66.2 | -41.3 | NA | NA | NA | |||||||||||||
6u2f | 1 | Q8NBP7 | 99.71 | 0.0 |
X-RAY |
2020-02-05 | GLY | A:263 | A:263 | 0.0 | 0.0 | H | -66.3 | -39.5 | 0.0 | 0.0 | 0.0 | ||||||
5vlp | 1 | Q8NBP7 | 99.71 | 0.0 |
X-RAY |
2017-08-16 | GLY | A:263 | A:263 | 0.0 | 0.0 | H | -70.5 | -35.9 | 0.0 | 0.0 | 0.0 | ||||||
6u3i | 1 | Q8NBP7 | 99.71 | 0.0 |
X-RAY |
2020-02-05 | GLY | A:263 | A:263 | 0.0 | 0.0 | H | -70.9 | -38.5 | 0.0 | 0.0 | 0.0 | ||||||
6u26 | 1 | Q8NBP7 | 99.7 | 0.0 |
X-RAY |
2019-11-06 | GLY | A:233 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
GLY | B:233 | B:263 | 0.0 | 0.0 | H | -62.6 | -40.4 | NA | NA | NA | |||||||||||||
6u2n | 1 | Q8NBP7 | 99.7 | 0.0 |
X-RAY |
2019-11-06 | GLY | A:233 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
GLY | B:233 | B:263 | 0.0 | 0.0 | H | -67.1 | -34.9 | 0.0 | 0.0 | 0.0 |
HOH |
3.418 |
CA |
O |
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6u2p | 1 | Q8NBP7 | 99.7 | 0.0 |
X-RAY |
2019-11-06 | GLY | A:233 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
GLY | B:233 | B:263 | 0.0 | 0.0 | H | -64.8 | -38.2 | 0.0 | 0.0 | 0.0 |
HOH |
3.378 |
CA |
O |
|||||||||
6u36 | 1 | Q8NBP7 | 99.7 | 0.0 |
X-RAY |
2019-11-06 | GLY | A:233 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
GLY | B:233 | B:263 | 0.0 | 0.0 | H | -64.0 | -32.5 | 0.0 | 0.0 | 0.0 | |||||||||||||
6u38 | 1 | Q8NBP7 | 99.7 | 0.0 |
X-RAY |
2019-11-06 | GLY | A:233 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
GLY | B:233 | B:263 | 1.0 | 0.013 | H | -67.7 | -33.0 | 1.0 | 0.013 | 0.0 |
HOH |
3.670 |
CA |
O |
|||||||||
6u3x | 1 | Q8NBP7 | 99.7 | 0.0 |
X-RAY |
2019-11-06 | GLY | A:233 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
GLY | B:233 | B:263 | 1.0 | 0.013 | H | -61.9 | -39.4 | 1.0 | 0.013 | 0.0 |
HOH |
7.977 |
CA |
O |
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2pmw | 2 | Q5SZQ2 | 100.0 | 0.0 |
X-RAY |
2007-05-08 | GLY | B:111 | B:263 | 0.0 | 0.0 | H | -54.7 | -45.5 | 0.0 | 0.0 | 0.0 |
HOH |
3.540 |
CA |
O |
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3p5b | 2 | Q8NBP7 | 99.81 | 0.0 |
X-RAY |
2011-10-26 | GLY | B:111 | A:263 | 1.0 | 0.013 | H | -70.1 | -30.4 | 1.0 | 0.013 | 0.0 | ||||||
3p5c | 2 | Q8NBP7 | 99.81 | 0.0 |
X-RAY |
2011-10-26 | GLY | B:111 | A:263 | 1.0 | 0.013 | H | -70.1 | -30.4 | 1.0 | 0.013 | 0.0 | ||||||
3bps | 2 | Q8NBP7 | 99.63 | 0.0 |
X-RAY |
2008-02-12 | GLY | B:111 | A:263 | 16.0 | 0.213 | H | -66.7 | -34.0 | 16.0 | 0.213 | 0.0 |
HOH |
3.524 |
CA |
O |
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3gcw | 2 | Q8NBP7 | 99.63 | 0.0 |
X-RAY |
2009-03-03 | GLY | B:111 | A:263 | 4.0 | 0.053 | H | -63.5 | -40.2 | 4.0 | 0.053 | 0.0 | ||||||
3gcx | 2 | Q8NBP7 | 99.63 | 0.0 |
X-RAY |
2009-03-03 | GLY | B:111 | A:263 | 10.0 | 0.133 | H | -65.1 | -39.5 | 10.0 | 0.133 | 0.0 | ||||||
3sqo | 1 | Q8NBP7 | 99.63 | 0.0 |
X-RAY |
2012-05-16 | GLY | A:111 | A:263 | 0.0 | 0.0 | H | -61.0 | -40.5 | 0.0 | 0.0 | 0.0 |
HOH |
3.646 |
CA |
O |
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4ne9 | 1 | Q8NBP7 | 99.63 | 0.0 |
X-RAY |
2014-09-10 | GLY | A:111 | A:263 | 0.0 | 0.0 | H | -65.1 | -41.6 | 0.0 | 0.0 | 0.0 |
HOH |
6.332 |
CA |
O |
||
GLY | B:111 | B:263 | 0.0 | 0.0 | H | -63.3 | -42.3 | NA | NA | NA | |||||||||||||
4k8r | 2 | Q8NBP7 | 99.63 | 0.0 |
X-RAY |
2013-05-08 | GLY | B:111 | B:263 | 0.0 | 0.0 | H | -65.2 | -43.6 | 0.0 | 0.0 | 0.0 |
HOH |
6.767 |
O |
O |
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5vl7 | 2 | Q8NBP7 | 99.63 | 0.0 |
X-RAY |
2017-08-16 | GLY | B:111 | B:263 | 0.0 | 0.0 | H | -51.0 | -57.3 | 0.0 | 0.0 | 0.0 | ||||||
2qtw | 2 | Q8NBP7 | 99.63 | 0.0 |
X-RAY |
2007-09-18 | GLY | B:111 | B:263 | 0.0 | 0.0 | H | -61.2 | -37.8 | 0.0 | 0.0 | 0.0 |
HOH |
3.604 |
N |
O |
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7kev | 2 | Q8NBP7 | 99.63 | 0.0 |
X-RAY |
2021-11-24 | GLY | B:111 | B:263 | 0.0 | 0.0 | H | -59.6 | -39.8 | 0.0 | 0.0 | 0.0 |
HOH |
6.545 |
N |
O |
||
7kfa | 2 | Q8NBP7 | 99.63 | 0.0 |
X-RAY |
2021-11-10 | GLY | B:111 | B:263 | 0.0 | 0.0 | H | -63.3 | -37.7 | 0.0 | 0.0 | 0.0 |
HOH |
3.826 |
N |
O |
||
3m0c | 2 | Q8NBP7 | 99.44 | 0.0 |
X-RAY |
2011-03-16 | GLY | B:111 | B:263 | 0.0 | 0.0 | H | -61.2 | -37.7 | 0.0 | 0.0 | 0.0 | ||||||
3h42 | 2 | Q8NBP7 | 99.26 | 0.0 |
X-RAY |
2009-05-05 | GLY | B:111 | B:263 | 0.0 | 0.0 | H | -65.9 | -36.3 | 0.0 | 0.0 | 0.0 |
HOH |
3.810 |
CA |
O |
||
5oca | 2 | Q8NBP7 | 99.26 | 0.0 |
X-RAY |
2017-09-20 | GLY | B:111 | B:263 | 0.0 | 0.0 | H | -65.3 | -37.5 | 0.0 | 0.0 | 0.0 |
HOH |
3.822 |
N |
O |
||
5vla | 1 | Q8NBP7 | 99.78 | 0.0 |
X-RAY |
2017-08-16 | GLY | A:263 | A:263 | 0.0 | 0.0 | H | -61.4 | -41.7 | 0.0 | 0.0 | 0.0 |
HOH |
3.410 |
CA |
O |
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5vlh | 1 | Q8NBP7 | 99.78 | 0.0 |
X-RAY |
2017-08-16 | GLY | A:263 | A:263 | 0.0 | 0.0 | H | -56.7 | -45.5 | 0.0 | 0.0 | 0.0 | ||||||
5vlk | 1 | Q8NBP7 | 99.78 | 0.0 |
X-RAY |
2017-08-16 | GLY | A:263 | A:263 | 0.0 | 0.0 | H | -61.2 | -37.5 | 0.0 | 0.0 | 0.0 |
HOH |
3.625 |
N |
O |
||
5vll | 1 | Q8NBP7 | 99.78 | 0.0 |
X-RAY |
2017-08-16 | GLY | A:263 | A:263 | 0.0 | 0.0 | H | -56.6 | -43.8 | 0.0 | 0.0 | 0.0 |
HOH |
3.512 |
CA |
O |
||
4nmx | 2 | Q8NBP7 | 100.0 | 0.0 |
X-RAY |
2013-12-04 | GLY | B:111 | B:263 | 0.0 | 0.0 | H | -60.5 | -43.1 | 0.0 | 0.0 | 0.0 |
HOH |
3.539 |
CA |
O |
||
6xib | 2 | Q8NBP7 | 100.0 | 0.0 |
X-RAY |
2020-11-18 | GLY | B:111 | B:263 | 0.0 | 0.0 | H | -63.6 | -40.4 | 0.0 | 0.0 | 0.0 |
HOH |
3.647 |
CA |
O |
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6xic | 2 | Q8NBP7 | 100.0 | 0.0 |
X-RAY |
2020-11-18 | GLY | B:111 | B:263 | 0.0 | 0.0 | H | -64.5 | -38.5 | 0.0 | 0.0 | 0.0 |
HOH |
3.647 |
CA |
O |
||
6xid | 2 | Q8NBP7 | 100.0 | 0.0 |
X-RAY |
2020-11-18 | GLY | B:111 | B:263 | 0.0 | 0.0 | H | -65.4 | -40.8 | 0.0 | 0.0 | 0.0 |
HOH |
3.618 |
CA |
O |
||
6xie | 2 | Q8NBP7 | 100.0 | 0.0 |
X-RAY |
2020-11-18 | GLY | B:111 | B:263 | 1.0 | 0.013 | H | -63.2 | -39.4 | 1.0 | 0.013 | 0.0 |
HOH |
3.622 |
CA |
O |
||
6xif | 2 | Q8NBP7 | 100.0 | 0.0 |
X-RAY |
2020-11-18 | GLY | B:111 | B:263 | 0.0 | 0.0 | H | -61.2 | -41.7 | 0.0 | 0.0 | 0.0 |
HOH |
3.554 |
CA |
O |
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7s5g | 2 | Q8NBP7 | 100.0 | 0.0 |
X-RAY |
2021-11-03 | GLY | B:111 | B:263 | 0.0 | 0.0 | H | -66.9 | -41.7 | 0.0 | 0.0 | 0.0 |
HOH |
3.713 |
CA |
O |
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7s5h | 2 | Q8NBP7 | 100.0 | 0.0 |
X-RAY |
2021-11-03 | GLY | B:111 | B:263 | 0.0 | 0.0 | H | -67.3 | -39.3 | 0.0 | 0.0 | 0.0 |
HOH |
3.608 |
N |
O |
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2w2m | 1 | Q8NBP7 | 100.0 | 0.0 |
X-RAY |
2008-11-18 | GLY | A:111 | A:263 | 0.0 | 0.0 | H | -67.6 | -34.0 | 0.0 | 0.0 | 0.0 |
HOH |
3.777 |
CA |
O |
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2w2n | 1 | Q8NBP7 | 100.0 | 0.0 |
X-RAY |
2008-11-18 | GLY | A:111 | A:263 | 0.0 | 0.0 | H | -71.3 | -40.5 | 0.0 | 0.0 | 0.0 |
HOH |
3.598 |
CA |
O |
||
2w2p | 1 | Q8NBP7 | 99.67 | 0.0 |
X-RAY |
2008-11-18 | GLY | A:111 | A:263 | 0.0 | 0.0 | H | -63.9 | -36.8 | 0.0 | 0.0 | 0.0 |
HOH |
6.716 |
O |
O |
||
2w2q | 1 | Q8NBP7 | 99.67 | 0.0 |
X-RAY |
2008-11-18 | GLY | A:111 | A:263 | 0.0 | 0.0 | H | -58.8 | -40.8 | 0.0 | 0.0 | 0.0 |
HOH |
3.615 |
N |
O |
||
2w2o | 1 | Q8NBP7 | 99.67 | 0.0 |
X-RAY |
2008-11-18 | GLY | A:111 | A:263 | 0.0 | 0.0 | H | -63.8 | -44.5 | 0.0 | 0.0 | 0.0 |
HOH |
6.822 |
CA |
O |
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2xtj | 1 | Q8NBP7 | 99.67 | 0.0 |
X-RAY |
2010-11-03 | GLY | A:111 | A:263 | 0.0 | 0.0 | H | -62.7 | -39.4 | 0.0 | 0.0 | 0.0 |
HOH |
3.493 |
N |
O |
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4ov6 | 2 | Q8NBP7 | 100.0 | 0.0 |
X-RAY |
2014-07-02 | GLY | B:111 | B:263 | 0.0 | 0.0 | H | -65.0 | -36.3 | 0.0 | 0.0 | 0.0 |
HOH |
3.950 |
CA |
O |
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GLY | D:111 | E:263 | 0.0 | 0.0 | H | -60.2 | -41.9 | NA | NA | NA |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q8nbp7-f1 | 1 | Q8NBP7 | 100.0 | 0.0 | GLY | A:263 | A:263 | 0.0 | 0.0 | H | -67.0 | -44.2 |