Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 64059325 | . | A | C | CCDS625.1:NM_002633.2:c.166Acg>Ccg_NP_002624.2:p.56T>P | Homo sapiens phosphoglucomutase 1 (PGM1), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
5epc | 1 | P36871 | 100.0 | 0.0 |
X-RAY |
2016-04-27 | THR | A:79 | A:56 | 14.0 | 0.1 | E | -117.7 | 133.6 | 14.0 | 0.1 | 0.0 |
SO4 HOH |
5.844 2.612 |
OG1 OG1 |
O3 O |
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THR | B:79 | B:56 | 15.0 | 0.107 | E | -118.7 | 134.8 | NA | NA | NA | |||||||||||||
6uiq | 1 | P36871 | 100.0 | 0.0 |
X-RAY |
2020-08-12 | THR | A:79 | B:56 | 15.0 | 0.107 | E | -116.9 | 134.6 | 15.0 | 0.107 | 0.0 |
HOH |
2.745 |
OG1 |
O |
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THR | B:79 | A:56 | 15.0 | 0.107 | E | -115.4 | 135.3 | NA | NA | NA | |||||||||||||
5vin | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-27 | THR | A:79 | A:56 | 15.0 | 0.107 | E | -117.8 | 133.4 | 15.0 | 0.107 | 0.0 |
GOL HOH |
6.689 9.211 |
OG1 CG2 |
O2 O |
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THR | B:79 | B:56 | 14.0 | 0.1 | E | -118.9 | 134.7 | NA | NA | NA | |||||||||||||
6uo6 | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2020-03-04 | THR | A:79 | A:56 | 14.0 | 0.1 | E | -118.7 | 134.9 | 14.0 | 0.1 | 0.0 |
HOH |
2.777 |
OG1 |
O |
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THR | B:79 | B:56 | 16.0 | 0.114 | E | -118.2 | 134.7 | NA | NA | NA | |||||||||||||
5vg7 | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-20 | THR | A:58 | A:56 | 14.0 | 0.1 | E | -118.5 | 137.8 | 14.0 | 0.1 | 0.0 |
SO4 HOH |
6.780 2.791 |
CG2 OG1 |
O4 O |
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5vg7 | 2 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-20 | THR | B:58 | B:56 | 14.0 | 0.1 | E | -114.2 | 136.7 | NA | NA | NA | ||||||
5f9c | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2016-04-27 | THR | A:56 | A:56 | 16.0 | 0.114 | E | -120.4 | 137.5 | 16.0 | 0.114 | 0.0 |
HOH |
2.230 |
N |
O |
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THR | B:56 | B:56 | 13.0 | 0.093 | E | -121.9 | 133.9 | NA | NA | NA | |||||||||||||
5hsh | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2016-04-27 | THR | A:56 | A:56 | 11.0 | 0.079 | E | -123.6 | 138.2 | 11.0 | 0.079 | 0.0 |
SO4 HOH |
6.444 9.656 |
CG2 O |
O4 O |
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THR | B:56 | B:56 | 15.0 | 0.107 | E | -127.4 | 141.1 | NA | NA | NA | |||||||||||||
5tr2 | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2017-02-08 | THR | A:79 | A:56 | 13.0 | 0.093 | E | -124.9 | 131.4 | 13.0 | 0.093 | 0.0 | ||||||
THR | B:79 | B:56 | 10.0 | 0.071 | E | -127.2 | 140.7 | NA | NA | NA | |||||||||||||
5jn5 | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2017-02-08 | THR | A:79 | A:56 | 14.0 | 0.1 | E | -117.0 | 133.7 | 14.0 | 0.1 | 0.0 |
HOH |
2.844 |
OG1 |
O |
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THR | B:79 | B:56 | 14.0 | 0.1 | E | -119.8 | 131.9 | NA | NA | NA | |||||||||||||
5vec | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-27 | THR | A:79 | A:56 | 12.0 | 0.086 | E | -122.8 | 135.3 | 12.0 | 0.086 | 0.0 |
HOH |
2.885 |
N |
O |
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THR | B:79 | B:56 | 14.0 | 0.1 | E | -118.4 | 139.8 | NA | NA | NA | |||||||||||||
5vbi | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-20 | THR | A:79 | A:56 | 15.0 | 0.107 | E | -116.9 | 136.0 | 15.0 | 0.107 | 0.0 |
HOH |
2.639 |
OG1 |
O |
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THR | B:79 | B:56 | 13.0 | 0.093 | E | -116.4 | 135.1 | NA | NA | NA | |||||||||||||
1c47 | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1999-08-13 | THR | A:55 | A:55 | 19.0 | 0.136 | E | -111.1 | 135.5 | 19.0 | 0.136 | 0.0 | ||||||
THR | B:55 | B:55 | 17.0 | 0.121 | E | -117.3 | 133.1 | 17.0 | 0.121 | 0.0 | |||||||||||||
1c4g | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1999-08-27 | THR | A:55 | A:55 | 12.0 | 0.086 | E | -125.5 | 121.4 | 12.0 | 0.086 | 0.0 |
HOH |
6.932 |
CG2 |
O |
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THR | B:55 | B:55 | 19.0 | 0.136 | E | -121.5 | 149.9 | 19.0 | 0.136 | 0.0 |
HOH |
8.219 |
O |
O |
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1jdy | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1997-03-12 | THR | A:55 | A:55 | 17.0 | 0.121 | E | -115.0 | 131.0 | 17.0 | 0.121 | 0.0 |
HOH |
5.289 |
OG1 |
O |
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THR | B:55 | B:55 | 15.0 | 0.107 | E | -119.8 | 136.6 | NA | NA | NA | |||||||||||||
1lxt | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1997-02-12 | THR | A:55 | A:55 | 20.0 | 0.143 | E | -124.8 | 121.3 | 20.0 | 0.143 | 0.0 |
HOH |
3.151 |
N |
O |
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THR | B:55 | B:55 | 15.0 | 0.107 | E | -118.0 | 125.9 | NA | NA | NA | |||||||||||||
1vkl | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1997-01-11 | THR | A:55 | A:55 | 18.0 | 0.129 | E | -120.4 | 129.6 | 18.0 | 0.129 | 0.0 |
HOH |
6.436 |
CG2 |
O |
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THR | B:55 | B:55 | 16.0 | 0.114 | E | -117.5 | 129.7 | NA | NA | NA | |||||||||||||
3pmg | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1995-12-07 | THR | A:55 | A:55 | 13.0 | 0.093 | E | -125.9 | 132.4 | NA | NA | NA | ||||||
THR | B:55 | B:55 | 13.0 | 0.093 | E | -127.5 | 134.6 | 13.0 | 0.093 | 0.0 |
HOH |
1.896 |
H |
O |
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6sno | 1 | P36871 | 93.05 | 0.0 |
X-RAY |
2020-04-08 | SER | A:77 | A:74 | 27.0 | 0.235 | E | -111.6 | 148.4 | 27.0 | 0.235 | 0.0 |
HOH |
2.417 |
OG |
O |
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6snp | 1 | P36871 | 93.05 | 0.0 |
X-RAY |
2020-04-08 | SER | A:77 | A:74 | 29.0 | 0.252 | E | -97.6 | 140.0 | 29.0 | 0.252 | 0.0 |
HOH |
2.499 |
OG |
O |
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6snq | 1 | P36871 | 93.05 | 0.0 |
X-RAY |
2020-04-08 | SER | A:77 | A:74 | 30.0 | 0.261 | E | -104.1 | 139.5 | 30.0 | 0.261 | 0.0 |
HOH |
2.229 |
OG |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p36871-f1 | 1 | P36871 | 100.0 | 0.0 | THR | A:56 | A:56 | 13.0 | 0.093 | E | -112.1 | 134.0 |