Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 64089252 | . | C | A | CCDS53323.1:NM_001172818.1:c.121Cgg>Agg_NP_001166289.1:p.41R>R | Homo sapiens phosphoglucomutase 1 (PGM1), transcript variant 2, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6sno | 1 | P36871 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | ARG | A:44 | A:41 | 45.0 | 0.2 | E | -124.4 | 128.0 | 45.0 | 0.2 | 0.0 |
ZN G1P HOH |
6.477 5.653 4.809 |
NH1 NH1 O |
ZN C6 O |
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| 6snp | 1 | P36871 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | ARG | A:44 | A:41 | 54.0 | 0.24 | E | -116.0 | 124.2 | 54.0 | 0.24 | 0.0 |
MG HOH |
5.924 9.916 |
NH2 NE |
MG O |
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| 6snq | 1 | P36871 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | ARG | A:44 | A:41 | 111.0 | 0.493 | E | -121.7 | 123.9 | 111.0 | 0.493 | 0.0 |
G6P HOH |
9.549 3.052 |
NE N |
O2P O |
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| 5epc | 1 | P36871 | 93.05 | 0.0 |
X-RAY |
2016-04-27 | ARG | A:46 | A:23 | 76.0 | 0.338 | E | -121.4 | 125.4 | 76.0 | 0.338 | 0.0 |
MG SO4 SO4 GOL HOH |
5.939 8.715 3.222 8.899 2.684 |
NH2 NH1 NH2 NH1 NH2 |
MG O1 O1 O3 O |
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| ARG | B:46 | B:23 | 50.0 | NA | E | -123.0 | 123.7 | NA | NA | NA | |||||||||||||
| 6uiq | 1 | P36871 | 93.05 | 0.0 |
X-RAY |
2020-08-12 | ARG | A:46 | B:23 | 106.0 | 0.471 | E | -116.0 | 118.7 | 106.0 | 0.471 | 0.0 |
G6P HOH |
8.335 3.001 |
NE N |
O1 O |
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| ARG | B:46 | A:23 | 98.0 | 0.436 | E | -127.1 | 123.1 | NA | NA | NA | |||||||||||||
| 5vin | 1 | P36871 | 92.87 | 0.0 |
X-RAY |
2018-06-27 | ARG | A:46 | A:23 | 114.0 | 0.507 | E | -110.1 | 128.0 | 114.0 | 0.507 | 0.0 |
HOH |
7.132 |
O |
O |
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| ARG | B:46 | B:23 | 82.0 | 0.364 | E | -96.7 | 140.7 | NA | NA | NA | |||||||||||||
| 6uo6 | 1 | P36871 | 92.87 | 0.0 |
X-RAY |
2020-03-04 | ARG | A:46 | A:23 | 69.0 | 0.307 | E | -118.6 | 122.8 | 69.0 | 0.307 | 0.0 |
HOH |
3.257 |
O |
O |
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| ARG | B:46 | B:23 | 121.0 | 0.538 | E | -124.2 | 122.5 | NA | NA | NA | |||||||||||||
| 5vg7 | 1 | P36871 | 92.87 | 0.0 |
X-RAY |
2018-06-20 | ARG | A:25 | A:23 | 65.0 | 0.289 | E | -123.4 | 122.2 | 65.0 | 0.289 | 0.0 |
HOH |
3.037 |
N |
O |
||
| 5vg7 | 2 | P36871 | 92.87 | 0.0 |
X-RAY |
2018-06-20 | ARG | B:25 | B:23 | 137.0 | 0.609 | E | -117.7 | 120.9 | NA | NA | NA | ||||||
| 5vec | 1 | P36871 | 92.87 | 0.0 |
X-RAY |
2018-06-27 | ARG | A:46 | A:23 | 73.0 | 0.324 | E | -116.2 | 115.8 | 73.0 | 0.324 | 0.0 |
HOH |
3.217 |
N |
O |
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| ARG | B:46 | B:23 | 81.0 | 0.36 | E | -121.1 | 125.7 | NA | NA | NA | |||||||||||||
| 5tr2 | 1 | P36871 | 92.87 | 0.0 |
X-RAY |
2017-02-08 | ARG | A:46 | A:23 | 59.0 | 0.262 | E | -122.5 | 120.2 | 59.0 | 0.262 | 0.0 |
CA GOL HOH |
6.228 7.476 3.812 |
NH2 NH2 NH1 |
CA O2 O |
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| ARG | B:46 | B:23 | 64.0 | NA | E | -99.3 | 120.7 | NA | NA | NA | |||||||||||||
| 5f9c | 1 | P36871 | 92.87 | 0.0 |
X-RAY |
2016-04-27 | ARG | A:23 | A:23 | 55.0 | NA | E | -111.1 | 119.8 | 55.0 | NA | NA |
HOH |
6.355 |
N |
O |
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| ARG | B:23 | B:23 | 78.0 | NA | E | -112.9 | 115.2 | NA | NA | NA | |||||||||||||
| 5hsh | 1 | P36871 | 92.87 | 0.0 |
X-RAY |
2016-04-27 | ARG | A:23 | A:23 | 82.0 | NA | E | -122.6 | 108.3 | 82.0 | NA | NA |
HOH |
7.032 |
CB |
O |
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| ARG | B:23 | B:23 | 78.0 | NA | E | -122.9 | 110.5 | NA | NA | NA | |||||||||||||
| 5jn5 | 1 | P36871 | 92.87 | 0.0 |
X-RAY |
2017-02-08 | ARG | A:46 | A:23 | 66.0 | 0.293 | E | -121.6 | 125.5 | 66.0 | 0.293 | 0.0 |
SO4 CA HOH |
9.393 6.145 2.511 |
NH1 NH2 NH2 |
O2 CA O |
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| ARG | B:46 | B:23 | 54.0 | NA | E | -118.1 | 129.2 | NA | NA | NA | |||||||||||||
| 5vbi | 1 | P36871 | 92.87 | 0.0 |
X-RAY |
2018-06-20 | ARG | A:46 | A:23 | 134.0 | 0.596 | E | -119.1 | 126.6 | 134.0 | 0.596 | 0.0 |
SO4 HOH |
7.521 2.359 |
NH2 NH1 |
O2 O |
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| ARG | B:46 | B:23 | 124.0 | 0.551 | E | -122.5 | 125.2 | NA | NA | NA | |||||||||||||
| 1c47 | 1 | P00949 | 90.91 | 0.0 |
X-RAY |
1999-08-13 | ARG | A:22 | A:22 | 59.0 | 0.262 | E | -67.9 | 129.1 | 59.0 | 0.262 | 0.0 |
G16 CD HOH |
2.942 5.825 4.968 |
NH2 NH2 CB |
O1P CD O |
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| ARG | B:22 | B:22 | 73.0 | 0.324 | E | -91.5 | 116.2 | 73.0 | 0.324 | 0.0 |
CD HOH |
5.096 4.031 |
NH2 NH2 |
CD O |
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| 1c4g | 1 | P00949 | 90.91 | 0.0 |
X-RAY |
1999-08-27 | ARG | A:22 | A:22 | 62.0 | 0.276 | E | -125.6 | 133.9 | 62.0 | 0.276 | 0.0 |
CO VG1 HOH |
6.149 3.073 3.401 |
NH2 NH2 NH1 |
CO OV3 O |
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| ARG | B:22 | B:22 | 105.0 | 0.467 | E | -100.6 | 99.0 | 105.0 | 0.467 | 0.0 |
HOH |
5.821 |
NH2 |
O |
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| 1jdy | 1 | P00949 | 90.91 | 0.0 |
X-RAY |
1997-03-12 | ARG | A:22 | A:22 | 62.0 | 0.276 | E | -99.8 | 121.0 | 62.0 | 0.276 | 0.0 |
CD SO4 HOH |
6.160 9.267 2.769 |
NH2 NH1 NH2 |
CD O2 O |
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| ARG | B:22 | B:22 | 63.0 | 0.28 | E | -91.1 | 131.0 | NA | NA | NA | |||||||||||||
| 1lxt | 1 | P00949 | 90.91 | 0.0 |
X-RAY |
1997-02-12 | ARG | A:22 | A:22 | 56.0 | 0.249 | -92.8 | 130.8 | 56.0 | 0.249 | 0.0 |
CD SO4 HOH |
6.516 5.428 4.689 |
NH1 NH1 NH2 |
CD O4 O |
|||
| ARG | B:22 | B:22 | 81.0 | 0.36 | E | -79.1 | 152.0 | NA | NA | NA | |||||||||||||
| 1vkl | 1 | P00949 | 90.91 | 0.0 |
X-RAY |
1997-01-11 | ARG | A:22 | A:22 | 54.0 | 0.24 | E | -123.9 | 130.8 | 54.0 | 0.24 | 0.0 |
NI HOH |
6.624 3.786 |
NH1 NH2 |
NI O |
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| ARG | B:22 | B:22 | 72.0 | 0.32 | E | -88.8 | 141.3 | NA | NA | NA | |||||||||||||
| 3pmg | 1 | P00949 | 90.91 | 0.0 |
X-RAY |
1995-12-07 | ARG | A:22 | A:22 | 58.0 | 0.258 | E | -103.3 | 121.7 | NA | NA | NA | ||||||
| ARG | B:22 | B:22 | 72.0 | 0.32 | E | -99.3 | 132.4 | 72.0 | 0.32 | 0.0 |
MG HOH |
4.787 2.010 |
HH22 HE |
MG O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p36871-f1 | 1 | P36871 | 93.05 | 0.0 | ARG | A:23 | A:23 | 73.0 | 0.324 | E | -112.5 | 130.6 | |