Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 64089286 | . | G | A | CCDS53323.1:NM_001172818.1:c.155tGc>tAc_NP_001166289.1:p.52C>Y | Homo sapiens phosphoglucomutase 1 (PGM1), transcript variant 2, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
6sno | 1 | P36871 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | CYS | A:55 | A:52 | 32.0 | 0.237 | T | 58.6 | 15.9 | 32.0 | 0.237 | 0.0 |
HOH |
5.908 |
O |
O |
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6snp | 1 | P36871 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | CYS | A:55 | A:52 | 31.0 | 0.23 | T | 63.2 | 9.6 | 31.0 | 0.23 | 0.0 |
HOH |
2.421 |
SG |
O |
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6snq | 1 | P36871 | 100.0 | 0.0 |
X-RAY |
2020-04-08 | CYS | A:55 | A:52 | 30.0 | 0.222 | T | 60.3 | 11.4 | 30.0 | 0.222 | 0.0 |
HOH |
3.753 |
CB |
O |
||
5epc | 1 | P36871 | 93.05 | 0.0 |
X-RAY |
2016-04-27 | ASN | A:57 | A:34 | 38.0 | 0.237 | T | 59.5 | 19.5 | 38.0 | 0.237 | 0.0 |
HOH |
2.917 |
OD1 |
O |
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ASN | B:57 | B:34 | 37.0 | 0.231 | T | 56.2 | 25.1 | NA | NA | NA | |||||||||||||
6uiq | 1 | P36871 | 93.05 | 0.0 |
X-RAY |
2020-08-12 | ASN | A:57 | B:34 | 36.0 | 0.225 | T | 64.5 | 17.9 | 36.0 | 0.225 | 0.0 |
HOH |
2.930 |
OD1 |
O |
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ASN | B:57 | A:34 | 37.0 | 0.231 | T | 61.0 | 19.6 | NA | NA | NA | |||||||||||||
5vin | 1 | P36871 | 92.87 | 0.0 |
X-RAY |
2018-06-27 | ASN | A:57 | A:34 | 40.0 | 0.25 | T | 59.3 | 19.1 | 40.0 | 0.25 | 0.0 |
SO4 HOH |
6.454 9.079 |
N OD1 |
O1 O |
||
ASN | B:57 | B:34 | 26.0 | NA | T | 57.7 | 28.2 | NA | NA | NA | |||||||||||||
6uo6 | 1 | P36871 | 92.87 | 0.0 |
X-RAY |
2020-03-04 | ASN | A:57 | A:34 | 37.0 | 0.231 | T | 61.6 | 20.6 | 37.0 | 0.231 | 0.0 |
HOH |
2.834 |
N |
O |
||
ASN | B:57 | B:34 | 38.0 | 0.237 | T | 61.4 | 23.1 | NA | NA | NA | |||||||||||||
5vg7 | 1 | P36871 | 92.87 | 0.0 |
X-RAY |
2018-06-20 | ASN | A:36 | A:34 | 38.0 | 0.237 | T | 59.1 | 19.1 | 38.0 | 0.237 | 0.0 |
HOH |
3.051 |
ND2 |
O |
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5vg7 | 2 | P36871 | 92.87 | 0.0 |
X-RAY |
2018-06-20 | ASN | B:36 | B:34 | 34.0 | 0.212 | T | 64.1 | 16.1 | NA | NA | NA | ||||||
5vec | 1 | P36871 | 92.87 | 0.0 |
X-RAY |
2018-06-27 | ASN | A:57 | A:34 | 39.0 | 0.244 | T | 60.9 | 14.3 | 39.0 | 0.244 | 0.0 |
HOH |
3.129 |
N |
O |
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ASN | B:57 | B:34 | 34.0 | 0.212 | T | 59.0 | 24.1 | NA | NA | NA | |||||||||||||
5tr2 | 1 | P36871 | 92.87 | 0.0 |
X-RAY |
2017-02-08 | ASN | A:57 | A:34 | 41.0 | 0.256 | T | 56.3 | 22.3 | 41.0 | 0.256 | 0.0 |
HOH |
3.978 |
OD1 |
O |
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ASN | B:57 | B:34 | 38.0 | 0.237 | T | 66.1 | 3.3 | NA | NA | NA | |||||||||||||
5f9c | 1 | P36871 | 92.87 | 0.0 |
X-RAY |
2016-04-27 | ASN | A:34 | A:34 | 44.0 | 0.275 | T | 55.1 | 32.5 | 44.0 | 0.275 | 0.0 | ||||||
ASN | B:34 | B:34 | 20.0 | NA | T | 56.4 | 30.0 | NA | NA | NA | |||||||||||||
5hsh | 1 | P36871 | 92.87 | 0.0 |
X-RAY |
2016-04-27 | ASN | A:34 | A:34 | 36.0 | 0.225 | S | 67.4 | 9.1 | 36.0 | 0.225 | 0.0 |
HOH |
2.255 |
OD1 |
O |
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ASN | B:34 | B:34 | 33.0 | 0.206 | S | 67.8 | 11.2 | NA | NA | NA | |||||||||||||
5jn5 | 1 | P36871 | 92.87 | 0.0 |
X-RAY |
2017-02-08 | ASN | A:57 | A:34 | 35.0 | 0.219 | T | 60.1 | 21.6 | 35.0 | 0.219 | 0.0 |
HOH |
3.034 |
ND2 |
O |
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ASN | B:57 | B:34 | 37.0 | 0.231 | T | 59.8 | 22.9 | NA | NA | NA | |||||||||||||
5vbi | 1 | P36871 | 92.87 | 0.0 |
X-RAY |
2018-06-20 | ASN | A:57 | A:34 | 35.0 | 0.219 | T | 61.4 | 19.5 | 35.0 | 0.219 | 0.0 |
HOH |
2.895 |
N |
O |
||
ASN | B:57 | B:34 | 40.0 | 0.25 | T | 62.1 | 18.8 | NA | NA | NA | |||||||||||||
1c47 | 1 | P00949 | 90.91 | 0.0 |
X-RAY |
1999-08-13 | ASN | A:33 | A:33 | 27.0 | 0.169 | T | 61.4 | 16.3 | 27.0 | 0.169 | 0.0 |
HOH |
8.970 |
C |
O |
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ASN | B:33 | B:33 | 24.0 | 0.15 | T | 71.0 | 7.2 | 24.0 | 0.15 | 0.0 | |||||||||||||
1c4g | 1 | P00949 | 90.91 | 0.0 |
X-RAY |
1999-08-27 | ASN | A:33 | A:33 | 28.0 | 0.175 | T | 63.8 | 62.3 | 28.0 | 0.175 | 0.0 |
HOH |
6.679 |
CB |
O |
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ASN | B:33 | B:33 | 35.0 | 0.219 | T | 135.4 | -28.8 | 35.0 | 0.219 | 0.0 |
HOH |
8.425 |
ND2 |
O |
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1jdy | 1 | P00949 | 90.91 | 0.0 |
X-RAY |
1997-03-12 | ASN | A:33 | A:33 | 30.0 | 0.188 | T | 75.3 | 23.0 | 30.0 | 0.188 | 0.0 |
HOH |
5.395 |
O |
O |
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ASN | B:33 | B:33 | 31.0 | 0.194 | T | 70.1 | 7.1 | NA | NA | NA | |||||||||||||
1lxt | 1 | P00949 | 90.91 | 0.0 |
X-RAY |
1997-02-12 | ASN | A:33 | A:33 | 27.0 | 0.169 | T | 62.9 | 19.8 | 27.0 | 0.169 | 0.0 |
HOH |
3.720 |
ND2 |
O |
||
ASN | B:33 | B:33 | 30.0 | 0.188 | T | 64.8 | 14.0 | NA | NA | NA | |||||||||||||
1vkl | 1 | P00949 | 90.91 | 0.0 |
X-RAY |
1997-01-11 | ASN | A:33 | A:33 | 30.0 | 0.188 | T | 71.1 | 18.5 | 30.0 | 0.188 | 0.0 |
HOH |
5.599 |
O |
O |
||
ASN | B:33 | B:33 | 31.0 | 0.194 | T | 64.9 | 11.9 | NA | NA | NA | |||||||||||||
3pmg | 1 | P00949 | 90.91 | 0.0 |
X-RAY |
1995-12-07 | ASN | A:33 | A:33 | 24.0 | 0.15 | T | 62.8 | 18.2 | NA | NA | NA | ||||||
ASN | B:33 | B:33 | 24.0 | 0.15 | T | 62.2 | 16.1 | 24.0 | 0.15 | 0.0 |
HOH |
4.641 |
O |
H2 |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p36871-f1 | 1 | P36871 | 93.05 | 0.0 | ASN | A:34 | A:34 | 41.0 | 0.256 | T | 59.2 | 14.8 |