Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 64114323 | . | G | A | CCDS625.1:NM_002633.2:c.1280aGg>aAg_NP_002624.2:p.427R>K | Homo sapiens phosphoglucomutase 1 (PGM1), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 5epc | 1 | P36871 | 100.0 | 0.0 |
X-RAY |
2016-04-27 | ARG | A:450 | A:427 | 29.0 | 0.129 | E | -119.9 | 123.2 | 29.0 | 0.129 | 0.0 |
SO4 SO4 GOL GOL GOL HOH |
6.945 9.535 7.867 9.394 3.539 2.808 |
CD NH1 N O NH1 O |
O4 O4 C1 O1 C1 O |
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| ARG | B:450 | B:427 | 30.0 | 0.133 | E | -121.9 | 121.3 | NA | NA | NA | |||||||||||||
| 6uiq | 1 | P36871 | 100.0 | 0.0 |
X-RAY |
2020-08-12 | ARG | A:450 | B:427 | 27.0 | 0.12 | E | -122.4 | 126.1 | 27.0 | 0.12 | 0.0 |
G6P HOH |
6.821 2.722 |
CD O |
O3P O |
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| ARG | B:450 | A:427 | 24.0 | 0.107 | E | -130.0 | 121.7 | NA | NA | NA | |||||||||||||
| 5vin | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-27 | ARG | A:450 | A:427 | 30.0 | 0.133 | E | -120.6 | 123.6 | 30.0 | 0.133 | 0.0 |
SO4 HOH |
3.229 4.977 |
NH2 N |
O3 O |
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| ARG | B:450 | B:427 | 58.0 | 0.258 | E | -123.6 | 118.7 | NA | NA | NA | |||||||||||||
| 6uo6 | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2020-03-04 | ARG | A:450 | A:427 | 29.0 | 0.129 | E | -122.0 | 123.6 | 29.0 | 0.129 | 0.0 |
SO4 HOH |
6.865 2.787 |
CD O |
O4 O |
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| ARG | B:450 | B:427 | 30.0 | 0.133 | E | -125.8 | 119.3 | NA | NA | NA | |||||||||||||
| 5vg7 | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-20 | ARG | A:429 | A:427 | 38.0 | 0.169 | E | -117.0 | 125.3 | 38.0 | 0.169 | 0.0 |
SO4 GOL HOH |
9.787 8.089 2.731 |
NE N O |
O2 C3 O |
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| 5vg7 | 2 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-20 | ARG | B:429 | B:427 | 42.0 | 0.187 | E | -125.6 | 121.7 | NA | NA | NA | ||||||
| 5f9c | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2016-04-27 | ARG | A:427 | A:427 | 12.0 | 0.053 | E | -135.4 | 119.0 | 12.0 | 0.053 | 0.0 |
SO4 GOL GOL HOH |
7.115 7.977 9.486 3.515 |
CZ N O NH1 |
O4 C1 O1 O |
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| ARG | B:427 | B:427 | 32.0 | 0.142 | E | -132.6 | 117.8 | NA | NA | NA | |||||||||||||
| 5hsh | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2016-04-27 | ARG | A:427 | A:427 | 22.0 | 0.098 | E | -122.9 | 124.3 | 22.0 | 0.098 | 0.0 |
SO4 HOH |
3.061 3.537 |
NH1 NH1 |
O3 O |
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| ARG | B:427 | B:427 | 26.0 | 0.116 | E | -126.4 | 123.4 | NA | NA | NA | |||||||||||||
| 5tr2 | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2017-02-08 | ARG | A:450 | A:427 | 26.0 | 0.116 | E | -133.1 | 137.3 | 26.0 | 0.116 | 0.0 |
SO4 HOH |
6.929 2.954 |
NE NH1 |
O3 O |
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| ARG | B:450 | B:427 | 22.0 | 0.098 | E | -125.7 | 133.9 | NA | NA | NA | |||||||||||||
| 5jn5 | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2017-02-08 | ARG | A:450 | A:427 | 21.0 | 0.093 | E | -123.7 | 123.0 | 21.0 | 0.093 | 0.0 |
SO4 HOH |
6.909 2.769 |
CD O |
O4 O |
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| ARG | B:450 | B:427 | 22.0 | 0.098 | E | -123.3 | 126.1 | NA | NA | NA | |||||||||||||
| 5vec | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-27 | ARG | A:450 | A:427 | 47.0 | 0.209 | E | -123.4 | 128.3 | 47.0 | 0.209 | 0.0 |
SO4 HOH |
5.899 2.547 |
NH1 O |
O2 O |
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| ARG | B:450 | B:427 | 47.0 | 0.209 | E | -138.7 | 110.6 | NA | NA | NA | |||||||||||||
| 5vbi | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-20 | ARG | A:450 | A:427 | 38.0 | 0.169 | E | -122.0 | 124.8 | 38.0 | 0.169 | 0.0 |
GOL GOL GOL HOH |
9.290 3.389 3.347 2.838 |
NH1 N NH1 O |
O1 O2 O2 O |
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| ARG | B:450 | B:427 | 35.0 | 0.156 | E | -121.4 | 122.6 | NA | NA | NA | |||||||||||||
| 1c47 | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1999-08-13 | ARG | A:426 | A:426 | 19.0 | 0.084 | E | -112.9 | 108.9 | 19.0 | 0.084 | 0.0 |
G16 HOH |
6.080 2.756 |
NH2 NH2 |
O2 O |
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| ARG | B:426 | B:426 | 24.0 | 0.107 | E | -123.8 | 122.1 | 24.0 | 0.107 | 0.0 |
HOH |
2.814 |
O |
O |
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| 1c4g | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1999-08-27 | ARG | A:426 | A:426 | 13.0 | 0.058 | -102.6 | 69.8 | 13.0 | 0.058 | 0.0 |
VG1 HOH |
6.321 3.998 |
NH2 N |
O2 O |
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| ARG | B:426 | B:426 | 30.0 | 0.133 | E | -131.7 | 111.4 | 30.0 | 0.133 | 0.0 |
HOH |
2.334 |
NH2 |
O |
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| 1jdy | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1997-03-12 | ARG | A:426 | A:426 | 23.0 | 0.102 | E | -145.2 | 120.4 | 23.0 | 0.102 | 0.0 |
SO4 HOH |
7.472 2.552 |
NH2 NH2 |
O1 O |
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| ARG | B:426 | B:426 | 30.0 | 0.133 | E | -140.1 | 113.9 | NA | NA | NA | |||||||||||||
| 1lxt | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1997-02-12 | ARG | A:426 | A:426 | 20.0 | 0.089 | E | -145.5 | 123.9 | 20.0 | 0.089 | 0.0 |
SO4 HOH |
9.068 2.580 |
NH2 NH2 |
O1 O |
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| ARG | B:426 | B:426 | 32.0 | 0.142 | E | -142.4 | 108.6 | NA | NA | NA | |||||||||||||
| 1vkl | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1997-01-11 | ARG | A:426 | A:426 | 24.0 | 0.107 | E | -133.9 | 123.8 | 24.0 | 0.107 | 0.0 |
HOH |
2.818 |
NH2 |
O |
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| ARG | B:426 | B:426 | 23.0 | 0.102 | E | -137.3 | 119.1 | NA | NA | NA | |||||||||||||
| 3pmg | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1995-12-07 | ARG | A:426 | A:426 | 38.0 | 0.169 | E | -130.6 | 121.2 | NA | NA | NA | ||||||
| ARG | B:426 | B:426 | 23.0 | 0.102 | E | -125.1 | 116.2 | 23.0 | 0.102 | 0.0 |
HOH |
1.643 |
HH22 |
H2 |
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| 6sno | 1 | P36871 | 93.05 | 0.0 |
X-RAY |
2020-04-08 | ARG | A:448 | A:445 | 12.0 | 0.053 | E | -142.9 | 125.7 | 12.0 | 0.053 | 0.0 |
G1P HOH |
6.122 4.931 |
NH2 NH1 |
O2 O |
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| 6snp | 1 | P36871 | 93.05 | 0.0 |
X-RAY |
2020-04-08 | ARG | A:448 | A:445 | 14.0 | 0.062 | E | -147.1 | 130.8 | 14.0 | 0.062 | 0.0 |
HOH |
8.257 |
NH1 |
O |
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| 6snq | 1 | P36871 | 93.05 | 0.0 |
X-RAY |
2020-04-08 | ARG | A:448 | A:445 | 13.0 | 0.058 | E | -143.4 | 128.6 | 13.0 | 0.058 | 0.0 |
G6P HOH |
7.103 2.920 |
NH1 O |
O3P O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p36871-f1 | 1 | P36871 | 100.0 | 0.0 | ARG | A:427 | A:427 | 15.0 | 0.067 | E | -118.2 | 128.1 | |