Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 64117342 | . | A | C | CCDS625.1:NM_002633.2:c.1283tAt>tCt_NP_002624.2:p.428Y>S | Homo sapiens phosphoglucomutase 1 (PGM1), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 5epc | 1 | P36871 | 100.0 | 0.0 |
X-RAY |
2016-04-27 | TYR | A:451 | A:428 | 27.0 | 0.117 | E | -95.3 | 120.1 | 27.0 | 0.117 | 0.0 |
SO4 GOL GOL HOH |
9.316 4.139 8.172 2.482 |
O OH O OH |
O4 C3 O1 O |
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| TYR | B:451 | B:428 | 38.0 | 0.165 | E | -96.2 | 123.6 | NA | NA | NA | |||||||||||||
| 6uiq | 1 | P36871 | 100.0 | 0.0 |
X-RAY |
2020-08-12 | TYR | A:451 | B:428 | 29.0 | 0.126 | E | -95.5 | 126.4 | 29.0 | 0.126 | 0.0 |
G6P HOH |
9.230 2.643 |
O OH |
O3P O |
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| TYR | B:451 | A:428 | 42.0 | 0.183 | E | -100.6 | 120.8 | NA | NA | NA | |||||||||||||
| 5vin | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-27 | TYR | A:451 | A:428 | 28.0 | 0.122 | E | -95.0 | 121.7 | 28.0 | 0.122 | 0.0 |
SO4 HOH |
9.196 2.745 |
O OH |
O3 O |
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| TYR | B:451 | B:428 | 76.0 | 0.33 | E | -97.2 | 122.0 | NA | NA | NA | |||||||||||||
| 6uo6 | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2020-03-04 | TYR | A:451 | A:428 | 25.0 | 0.109 | E | -95.4 | 122.8 | 25.0 | 0.109 | 0.0 |
SO4 HOH |
9.319 2.281 |
O OH |
O4 O |
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| TYR | B:451 | B:428 | 37.0 | 0.161 | E | -93.4 | 125.5 | NA | NA | NA | |||||||||||||
| 5vg7 | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-20 | TYR | A:430 | A:428 | 26.0 | 0.113 | E | -98.9 | 122.1 | 26.0 | 0.113 | 0.0 |
HOH |
2.516 |
OH |
O |
||
| 5vg7 | 2 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-20 | TYR | B:430 | B:428 | 37.0 | 0.161 | E | -100.6 | 126.2 | NA | NA | NA | ||||||
| 5f9c | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2016-04-27 | TYR | A:428 | A:428 | 23.0 | 0.1 | E | -91.9 | 125.8 | 23.0 | 0.1 | 0.0 |
SO4 GOL HOH |
9.298 4.129 7.147 |
O OH CD2 |
O4 O1 O |
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| TYR | B:428 | B:428 | 37.0 | 0.161 | E | -93.1 | 122.7 | NA | NA | NA | |||||||||||||
| 5hsh | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2016-04-27 | TYR | A:428 | A:428 | 26.0 | 0.113 | E | -99.0 | 129.1 | 26.0 | 0.113 | 0.0 |
SO4 HOH |
9.596 6.842 |
N CD2 |
O3 O |
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| TYR | B:428 | B:428 | 90.0 | 0.391 | E | -97.2 | 130.8 | NA | NA | NA | |||||||||||||
| 5tr2 | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2017-02-08 | TYR | A:451 | A:428 | 35.0 | 0.152 | E | -100.2 | 122.1 | 35.0 | 0.152 | 0.0 |
SO4 HOH |
8.969 2.564 |
O OH |
O3 O |
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| TYR | B:451 | B:428 | 85.0 | 0.37 | E | -109.3 | 118.1 | NA | NA | NA | |||||||||||||
| 5jn5 | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2017-02-08 | TYR | A:451 | A:428 | 27.0 | 0.117 | E | -93.2 | 122.3 | 27.0 | 0.117 | 0.0 |
SO4 HOH |
9.306 2.567 |
O OH |
O4 O |
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| TYR | B:451 | B:428 | 37.0 | 0.161 | E | -101.6 | 126.8 | NA | NA | NA | |||||||||||||
| 5vec | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-27 | TYR | A:451 | A:428 | 25.0 | 0.109 | E | -103.6 | 128.7 | 25.0 | 0.109 | 0.0 |
HOH |
2.600 |
OH |
O |
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| TYR | B:451 | B:428 | 36.0 | 0.157 | E | -89.0 | 131.0 | NA | NA | NA | |||||||||||||
| 5vbi | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-20 | TYR | A:451 | A:428 | 27.0 | 0.117 | E | -98.0 | 125.0 | 27.0 | 0.117 | 0.0 |
GOL GOL HOH |
6.612 8.004 2.316 |
N O OH |
O2 O1 O |
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| TYR | B:451 | B:428 | 36.0 | 0.157 | E | -96.8 | 128.4 | NA | NA | NA | |||||||||||||
| 1c47 | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1999-08-13 | TYR | A:427 | A:427 | 22.0 | 0.096 | E | -93.6 | 95.5 | 22.0 | 0.096 | 0.0 |
HOH |
8.832 |
N |
O |
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| TYR | B:427 | B:427 | 26.0 | 0.113 | E | -97.1 | 118.4 | 26.0 | 0.113 | 0.0 |
HOH |
3.346 |
CE1 |
O |
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| 1c4g | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1999-08-27 | TYR | A:427 | A:427 | 65.0 | 0.283 | -92.0 | 91.5 | 65.0 | 0.283 | 0.0 |
HOH |
6.876 |
N |
O |
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| TYR | B:427 | B:427 | 26.0 | 0.113 | E | -90.3 | 133.9 | 26.0 | 0.113 | 0.0 |
HOH |
3.338 |
CE1 |
O |
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| 1jdy | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1997-03-12 | TYR | A:427 | A:427 | 31.0 | 0.135 | E | -98.5 | 110.1 | 31.0 | 0.135 | 0.0 |
HOH |
7.589 |
N |
O |
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| TYR | B:427 | B:427 | 26.0 | 0.113 | E | -87.9 | 119.7 | NA | NA | NA | |||||||||||||
| 1lxt | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1997-02-12 | TYR | A:427 | A:427 | 23.0 | 0.1 | E | -103.9 | 105.2 | 23.0 | 0.1 | 0.0 |
HOH |
7.270 |
N |
O |
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| TYR | B:427 | B:427 | 23.0 | 0.1 | E | -85.7 | 119.3 | NA | NA | NA | |||||||||||||
| 1vkl | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1997-01-11 | TYR | A:427 | A:427 | 22.0 | 0.096 | E | -99.7 | 113.3 | 22.0 | 0.096 | 0.0 |
HOH |
7.184 |
N |
O |
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| TYR | B:427 | B:427 | 24.0 | 0.104 | E | -98.7 | 116.8 | NA | NA | NA | |||||||||||||
| 3pmg | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1995-12-07 | TYR | A:427 | A:427 | 29.0 | 0.126 | E | -97.5 | 117.5 | NA | NA | NA | ||||||
| TYR | B:427 | B:427 | 26.0 | 0.113 | E | -96.9 | 117.7 | 26.0 | 0.113 | 0.0 |
HOH |
1.847 |
HH |
O |
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| 6sno | 1 | P36871 | 93.05 | 0.0 |
X-RAY |
2020-04-08 | TYR | A:449 | A:446 | 17.0 | 0.074 | E | -102.3 | 132.4 | 17.0 | 0.074 | 0.0 |
G1P HOH |
9.308 8.011 |
O CE1 |
O1P O |
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| 6snp | 1 | P36871 | 93.05 | 0.0 |
X-RAY |
2020-04-08 | TYR | A:449 | A:446 | 25.0 | 0.109 | E | -109.5 | 134.7 | 25.0 | 0.109 | 0.0 | ||||||
| 6snq | 1 | P36871 | 93.05 | 0.0 |
X-RAY |
2020-04-08 | TYR | A:449 | A:446 | 20.0 | 0.087 | E | -104.4 | 125.9 | 20.0 | 0.087 | 0.0 |
G6P HOH |
9.389 4.534 |
O N |
O3P O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p36871-f1 | 1 | P36871 | 100.0 | 0.0 | TYR | A:428 | A:428 | 26.0 | 0.113 | E | -106.1 | 115.8 | |