Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 64120082 | . | G | A | CCDS625.1:NM_002633.2:c.1544cGg>cAg_NP_002624.2:p.515R>Q | Homo sapiens phosphoglucomutase 1 (PGM1), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 5epc | 1 | P36871 | 100.0 | 0.0 |
X-RAY |
2016-04-27 | ARG | A:538 | A:515 | 55.0 | 0.244 | E | -112.7 | 122.0 | 55.0 | 0.244 | 0.0 |
SO4 SO4 GOL HOH |
2.736 8.090 3.597 4.372 |
NE NH2 CD NH1 |
O4 O3 C1 O |
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| ARG | B:538 | B:515 | 63.0 | 0.28 | E | -108.6 | 122.0 | NA | NA | NA | |||||||||||||
| 6uiq | 1 | P36871 | 100.0 | 0.0 |
X-RAY |
2020-08-12 | ARG | A:538 | B:515 | 46.0 | 0.204 | E | -117.7 | 119.8 | 46.0 | 0.204 | 0.0 |
G6P HOH |
2.898 3.713 |
NE CD |
O3P O |
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| ARG | B:538 | A:515 | 45.0 | 0.2 | E | -118.9 | 116.0 | NA | NA | NA | |||||||||||||
| 5vin | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-27 | GLN | A:538 | A:515 | 31.0 | 0.172 | E | -118.6 | 112.3 | 31.0 | 0.172 | 0.0 |
SO4 HOH |
3.940 4.359 |
NE2 NE2 |
O3 O |
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| GLN | B:538 | B:515 | 5.0 | NA | E | -97.9 | 122.7 | NA | NA | NA | |||||||||||||
| 6uo6 | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2020-03-04 | ARG | A:538 | A:515 | 56.0 | 0.249 | E | -115.1 | 124.5 | 56.0 | 0.249 | 0.0 |
SO4 SO4 HOH |
2.909 6.546 3.040 |
NE NH2 NH1 |
O4 O4 O |
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| ARG | B:538 | B:515 | 59.0 | 0.262 | E | -117.2 | 118.8 | NA | NA | NA | |||||||||||||
| 5vg7 | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-20 | ARG | A:517 | A:515 | 70.0 | 0.311 | E | -111.4 | 120.7 | 70.0 | 0.311 | 0.0 |
SO4 SO4 HOH |
8.910 3.075 2.802 |
NH2 NH1 NH1 |
O4 O2 O |
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| 5vg7 | 2 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-20 | ARG | B:517 | B:515 | 56.0 | 0.249 | E | -110.4 | 117.7 | NA | NA | NA | ||||||
| 5f9c | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2016-04-27 | ARG | A:515 | A:515 | 60.0 | 0.267 | E | -122.5 | 122.5 | 60.0 | 0.267 | 0.0 |
SO4 HOH |
2.939 7.719 |
NE CD |
O4 O |
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| ARG | B:515 | B:515 | 58.0 | 0.258 | E | -122.0 | 123.7 | NA | NA | NA | |||||||||||||
| 5hsh | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2016-04-27 | ARG | A:515 | A:515 | 54.0 | 0.24 | E | -116.3 | 129.2 | 54.0 | 0.24 | 0.0 |
SO4 HOH |
3.482 3.249 |
NH2 NE |
O4 O |
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| ARG | B:515 | B:515 | 83.0 | 0.369 | E | -131.9 | 138.3 | NA | NA | NA | |||||||||||||
| 5tr2 | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2017-02-08 | ARG | A:538 | A:515 | 56.0 | 0.249 | E | -108.5 | 128.7 | 56.0 | 0.249 | 0.0 |
SO4 GOL HOH |
2.459 9.998 3.945 |
NE NH2 CD |
O3 O2 O |
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| ARG | B:538 | B:515 | 67.0 | 0.298 | E | -124.2 | 133.3 | NA | NA | NA | |||||||||||||
| 5jn5 | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2017-02-08 | ARG | A:538 | A:515 | 58.0 | 0.258 | E | -114.4 | 123.5 | 58.0 | 0.258 | 0.0 |
SO4 HOH |
2.853 2.894 |
NE NH1 |
O4 O |
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| ARG | B:538 | B:515 | 59.0 | 0.262 | E | -111.0 | 124.9 | NA | NA | NA | |||||||||||||
| 5vec | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-27 | LEU | A:538 | A:515 | 12.0 | 0.071 | E | -115.4 | 117.8 | 12.0 | 0.071 | 0.0 |
SO4 HOH |
4.333 4.306 |
CD1 CD1 |
O2 O |
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| LEU | B:538 | B:515 | 12.0 | 0.071 | E | -111.6 | 126.9 | NA | NA | NA | |||||||||||||
| 5vbi | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-20 | TRP | A:538 | A:515 | 58.0 | 0.227 | E | -105.7 | 122.7 | 58.0 | 0.227 | 0.0 |
SO4 GOL GOL GOL GOL HOH |
3.826 8.901 7.903 8.136 3.443 2.841 |
CH2 CH2 CZ3 CD1 CZ2 NE1 |
O3 O1 O2 O3 C3 O |
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| TRP | B:538 | B:515 | 56.0 | 0.22 | E | -107.9 | 123.6 | NA | NA | NA | |||||||||||||
| 1c47 | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1999-08-13 | ARG | A:514 | A:514 | 73.0 | 0.324 | E | -86.1 | 108.8 | 73.0 | 0.324 | 0.0 |
G16 HOH |
3.567 4.130 |
NH1 NH2 |
O1X O |
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| ARG | B:514 | B:514 | 59.0 | 0.262 | E | -99.0 | 116.1 | 59.0 | 0.262 | 0.0 |
HOH |
5.299 |
CD |
O |
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| 1c4g | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1999-08-27 | ARG | A:514 | A:514 | 89.0 | 0.396 | -61.1 | 104.5 | 89.0 | 0.396 | 0.0 |
VG1 HOH |
2.434 3.567 |
NH2 NH1 |
OP1 O |
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| ARG | B:514 | B:514 | 56.0 | 0.249 | E | -110.8 | 114.1 | 56.0 | 0.249 | 0.0 |
HOH |
3.690 |
NH2 |
O |
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| 1jdy | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1997-03-12 | ARG | A:514 | A:514 | 50.0 | 0.222 | E | -106.0 | 113.0 | 50.0 | 0.222 | 0.0 |
SO4 HOH |
4.059 6.691 |
NH1 NE |
O1 O |
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| ARG | B:514 | B:514 | 52.0 | 0.231 | E | -109.0 | 119.6 | NA | NA | NA | |||||||||||||
| 1lxt | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1997-02-12 | ARG | A:514 | A:514 | 69.0 | 0.307 | E | -100.7 | 117.4 | 69.0 | 0.307 | 0.0 |
HOH |
5.992 |
NH2 |
O |
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| ARG | B:514 | B:514 | 45.0 | 0.2 | E | -114.6 | 112.4 | NA | NA | NA | |||||||||||||
| 1vkl | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1997-01-11 | ARG | A:514 | A:514 | 49.0 | 0.218 | E | -119.0 | 113.5 | 49.0 | 0.218 | 0.0 |
HOH |
6.238 |
NH2 |
O |
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| ARG | B:514 | B:514 | 53.0 | 0.236 | E | -113.3 | 122.1 | NA | NA | NA | |||||||||||||
| 3pmg | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1995-12-07 | ARG | A:514 | A:514 | 51.0 | 0.227 | E | -112.2 | 106.9 | NA | NA | NA | ||||||
| ARG | B:514 | B:514 | 56.0 | 0.249 | E | -111.3 | 131.2 | 56.0 | 0.249 | 0.0 |
HOH |
1.783 |
HH22 |
H2 |
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| 6sno | 1 | P36871 | 93.05 | 0.0 |
X-RAY |
2020-04-08 | ARG | A:536 | A:533 | 35.0 | 0.156 | E | -118.4 | 121.3 | 35.0 | 0.156 | 0.0 |
G1P HOH |
3.113 4.332 |
NE CD |
O1P O |
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| 6snp | 1 | P36871 | 93.05 | 0.0 |
X-RAY |
2020-04-08 | ARG | A:536 | A:533 | 49.0 | 0.218 | E | -118.0 | 126.0 | 49.0 | 0.218 | 0.0 |
HOH |
4.529 |
NE |
O |
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| 6snq | 1 | P36871 | 93.05 | 0.0 |
X-RAY |
2020-04-08 | ARG | A:536 | A:533 | 48.0 | 0.213 | E | -122.1 | 124.3 | 48.0 | 0.213 | 0.0 |
G6P HOH |
2.980 3.725 |
NE CD |
O3P O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p36871-f1 | 1 | P36871 | 100.0 | 0.0 | ARG | A:515 | A:515 | 52.0 | 0.231 | E | -108.2 | 117.2 | |