Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 64120085 | . | T | A | CCDS625.1:NM_002633.2:c.1547cTg>cAg_NP_002624.2:p.516L>Q | Homo sapiens phosphoglucomutase 1 (PGM1), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 5epc | 1 | P36871 | 100.0 | 0.0 |
X-RAY |
2016-04-27 | LEU | A:539 | A:516 | 0.0 | 0.0 | E | -113.5 | 118.8 | 0.0 | 0.0 | 0.0 |
SO4 GOL HOH |
8.784 7.731 6.371 |
N N CD2 |
O4 O1 O |
||
| LEU | B:539 | B:516 | 0.0 | 0.0 | E | -111.6 | 114.6 | NA | NA | NA | |||||||||||||
| 6uiq | 1 | P36871 | 100.0 | 0.0 |
X-RAY |
2020-08-12 | LEU | A:539 | B:516 | 0.0 | 0.0 | E | -115.4 | 118.9 | 0.0 | 0.0 | 0.0 |
G6P HOH |
8.858 6.243 |
N CD2 |
O3P O |
||
| LEU | B:539 | A:516 | 0.0 | 0.0 | E | -109.9 | 119.0 | NA | NA | NA | |||||||||||||
| 5vin | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-27 | LEU | A:539 | A:516 | 0.0 | 0.0 | E | -109.5 | 117.4 | 0.0 | 0.0 | 0.0 |
HOH |
7.663 |
O |
O |
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| LEU | B:539 | B:516 | 16.0 | NA | E | -110.6 | 115.8 | NA | NA | NA | |||||||||||||
| 6uo6 | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2020-03-04 | LEU | A:539 | A:516 | 0.0 | 0.0 | E | -117.6 | 115.4 | 0.0 | 0.0 | 0.0 |
SO4 HOH |
8.872 6.359 |
N CD2 |
O4 O |
||
| LEU | B:539 | B:516 | 0.0 | 0.0 | E | -110.1 | 115.4 | NA | NA | NA | |||||||||||||
| 5vg7 | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-20 | LEU | A:518 | A:516 | 0.0 | 0.0 | E | -116.2 | 119.3 | 0.0 | 0.0 | 0.0 |
HOH |
6.374 |
CD2 |
O |
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| 5vg7 | 2 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-20 | LEU | B:518 | B:516 | 0.0 | 0.0 | E | -113.5 | 116.1 | NA | NA | NA | ||||||
| 5f9c | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2016-04-27 | LEU | A:516 | A:516 | 0.0 | 0.0 | E | -113.0 | 114.1 | 0.0 | 0.0 | 0.0 |
SO4 HOH |
8.904 7.796 |
N CD2 |
O4 O |
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| LEU | B:516 | B:516 | 0.0 | 0.0 | E | -111.7 | 112.3 | NA | NA | NA | |||||||||||||
| 5hsh | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2016-04-27 | LEU | A:516 | A:516 | 0.0 | 0.0 | E | -117.4 | 120.7 | 0.0 | 0.0 | 0.0 |
HOH |
7.481 |
CD2 |
O |
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| LEU | B:516 | B:516 | 32.0 | NA | E | -114.7 | 125.0 | NA | NA | NA | |||||||||||||
| 5tr2 | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2017-02-08 | LEU | A:539 | A:516 | 0.0 | 0.0 | E | -122.0 | 108.6 | 0.0 | 0.0 | 0.0 |
SO4 HOH |
8.619 6.893 |
N CD2 |
O3 O |
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| LEU | B:539 | B:516 | 16.0 | NA | E | -121.7 | 129.7 | NA | NA | NA | |||||||||||||
| 5jn5 | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2017-02-08 | LEU | A:539 | A:516 | 0.0 | 0.0 | E | -115.6 | 118.2 | 0.0 | 0.0 | 0.0 |
SO4 HOH |
8.750 6.419 |
N CD2 |
O4 O |
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| LEU | B:539 | B:516 | 0.0 | 0.0 | E | -115.9 | 112.5 | NA | NA | NA | |||||||||||||
| 5vec | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-27 | LEU | A:539 | A:516 | 0.0 | 0.0 | E | -114.6 | 116.9 | 0.0 | 0.0 | 0.0 |
SO4 HOH |
9.995 6.378 |
N O |
O2 O |
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| LEU | B:539 | B:516 | 0.0 | 0.0 | E | -126.0 | 115.6 | NA | NA | NA | |||||||||||||
| 5vbi | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-20 | LEU | A:539 | A:516 | 0.0 | 0.0 | E | -116.9 | 116.9 | 0.0 | 0.0 | 0.0 |
GOL GOL HOH |
7.378 7.576 6.250 |
O N CD2 |
O2 O1 O |
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| LEU | B:539 | B:516 | 0.0 | 0.0 | E | -113.7 | 114.6 | NA | NA | NA | |||||||||||||
| 1c47 | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1999-08-13 | LEU | A:515 | A:515 | 0.0 | 0.0 | E | -95.5 | 119.2 | 0.0 | 0.0 | 0.0 |
HOH |
9.715 |
O |
O |
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| LEU | B:515 | B:515 | 0.0 | 0.0 | E | -108.7 | 114.3 | 0.0 | 0.0 | 0.0 |
HOH |
6.973 |
CD2 |
O |
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| 1c4g | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1999-08-27 | LEU | A:515 | A:515 | 22.0 | 0.129 | -90.4 | 125.1 | 22.0 | 0.129 | 0.0 |
HOH |
7.719 |
N |
O |
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| LEU | B:515 | B:515 | 0.0 | 0.0 | E | -103.3 | 110.6 | 0.0 | 0.0 | 0.0 |
HOH |
6.749 |
CD2 |
O |
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| 1jdy | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1997-03-12 | LEU | A:515 | A:515 | 0.0 | 0.0 | E | -102.9 | 116.1 | 0.0 | 0.0 | 0.0 |
HOH |
8.451 |
O |
O |
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| LEU | B:515 | B:515 | 0.0 | 0.0 | E | -110.1 | 114.1 | NA | NA | NA | |||||||||||||
| 1lxt | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1997-02-12 | LEU | A:515 | A:515 | 0.0 | 0.0 | E | -101.5 | 100.8 | 0.0 | 0.0 | 0.0 |
HOH |
8.442 |
O |
O |
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| LEU | B:515 | B:515 | 0.0 | 0.0 | E | -111.5 | 114.2 | NA | NA | NA | |||||||||||||
| 1vkl | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1997-01-11 | LEU | A:515 | A:515 | 0.0 | 0.0 | E | -104.0 | 106.2 | 0.0 | 0.0 | 0.0 |
HOH |
8.143 |
O |
O |
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| LEU | B:515 | B:515 | 0.0 | 0.0 | E | -113.7 | 120.0 | NA | NA | NA | |||||||||||||
| 3pmg | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1995-12-07 | LEU | A:515 | A:515 | 0.0 | 0.0 | E | -110.1 | 119.8 | NA | NA | NA | ||||||
| LEU | B:515 | B:515 | 0.0 | 0.0 | E | -123.6 | 131.1 | 0.0 | 0.0 | 0.0 |
HOH |
5.709 |
CD2 |
H1 |
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| 6sno | 1 | P36871 | 93.05 | 0.0 |
X-RAY |
2020-04-08 | LEU | A:537 | A:534 | 0.0 | 0.0 | E | -113.9 | 114.2 | 0.0 | 0.0 | 0.0 |
G1P HOH |
8.814 7.852 |
N N |
O1P O |
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| 6snp | 1 | P36871 | 93.05 | 0.0 |
X-RAY |
2020-04-08 | LEU | A:537 | A:534 | 0.0 | 0.0 | E | -115.7 | 113.9 | 0.0 | 0.0 | 0.0 | ||||||
| 6snq | 1 | P36871 | 93.05 | 0.0 |
X-RAY |
2020-04-08 | LEU | A:537 | A:534 | 0.0 | 0.0 | E | -118.5 | 117.3 | 0.0 | 0.0 | 0.0 |
G6P HOH |
8.851 6.906 |
N O |
O3P O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p36871-f1 | 1 | P36871 | 100.0 | 0.0 | LEU | A:516 | A:516 | 0.0 | 0.0 | E | -104.1 | 121.3 | |