Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr1 | 64120089 | . | C | A | CCDS625.1:NM_002633.2:c.1551taC>taA_NP_002624.2:p.517Y>* | Homo sapiens phosphoglucomutase 1 (PGM1), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 5epc | 1 | P36871 | 100.0 | 0.0 |
X-RAY |
2016-04-27 | TYR | A:540 | A:517 | 4.0 | 0.017 | E | -108.9 | 131.0 | 4.0 | 0.017 | 0.0 |
SO4 GOL HOH |
4.532 2.620 5.320 |
OH OH OH |
O4 O1 O |
||
| TYR | B:540 | B:517 | 4.0 | 0.017 | E | -104.2 | 133.5 | NA | NA | NA | |||||||||||||
| 6uiq | 1 | P36871 | 100.0 | 0.0 |
X-RAY |
2020-08-12 | TYR | A:540 | B:517 | 4.0 | 0.017 | E | -106.6 | 130.6 | 4.0 | 0.017 | 0.0 |
G6P HOH |
4.312 3.187 |
OH OH |
O3P O |
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| TYR | B:540 | A:517 | 5.0 | 0.022 | E | -106.3 | 135.8 | NA | NA | NA | |||||||||||||
| 5vin | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-27 | TYR | A:540 | A:517 | 2.0 | 0.009 | E | -108.3 | 131.3 | 2.0 | 0.009 | 0.0 |
SO4 HOH |
6.565 4.911 |
OH OH |
O3 O |
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| TYR | B:540 | B:517 | 8.0 | 0.035 | E | -104.7 | 133.5 | NA | NA | NA | |||||||||||||
| 6uo6 | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2020-03-04 | TYR | A:540 | A:517 | 3.0 | 0.013 | E | -107.1 | 131.5 | 3.0 | 0.013 | 0.0 |
SO4 HOH |
4.453 2.526 |
OH OH |
O4 O |
||
| TYR | B:540 | B:517 | 4.0 | 0.017 | E | -104.3 | 135.1 | NA | NA | NA | |||||||||||||
| 5vg7 | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-20 | TYR | A:519 | A:517 | 6.0 | 0.026 | E | -109.7 | 133.1 | 6.0 | 0.026 | 0.0 |
SO4 HOH |
7.726 2.724 |
OH OH |
O2 O |
||
| 5vg7 | 2 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-20 | TYR | B:519 | B:517 | 5.0 | 0.022 | E | -106.4 | 129.7 | NA | NA | NA | ||||||
| 5f9c | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2016-04-27 | TYR | A:517 | A:517 | 5.0 | 0.022 | E | -101.7 | 133.5 | 5.0 | 0.022 | 0.0 |
SO4 HOH |
4.379 5.325 |
OH OH |
O4 O |
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| TYR | B:517 | B:517 | 4.0 | 0.017 | E | -100.0 | 134.1 | NA | NA | NA | |||||||||||||
| 5hsh | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2016-04-27 | TYR | A:517 | A:517 | 4.0 | 0.017 | E | -109.8 | 131.6 | 4.0 | 0.017 | 0.0 |
SO4 HOH |
8.117 2.819 |
CE2 OH |
O3 O |
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| TYR | B:517 | B:517 | 8.0 | 0.035 | E | -105.2 | 131.1 | NA | NA | NA | |||||||||||||
| 5tr2 | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2017-02-08 | TYR | A:540 | A:517 | 6.0 | 0.026 | E | -98.1 | 135.1 | 6.0 | 0.026 | 0.0 |
SO4 HOH |
4.442 3.014 |
OH OH |
O3 O |
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| TYR | B:540 | B:517 | 8.0 | 0.035 | E | -117.4 | 125.4 | NA | NA | NA | |||||||||||||
| 5jn5 | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2017-02-08 | TYR | A:540 | A:517 | 6.0 | 0.026 | E | -109.1 | 131.9 | 6.0 | 0.026 | 0.0 |
SO4 HOH |
4.421 2.913 |
OH OH |
O4 O |
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| TYR | B:540 | B:517 | 5.0 | 0.022 | E | -103.1 | 130.6 | NA | NA | NA | |||||||||||||
| 5vec | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-27 | TYR | A:540 | A:517 | 4.0 | 0.017 | E | -108.6 | 131.0 | 4.0 | 0.017 | 0.0 |
SO4 HOH |
4.997 2.742 |
OH OH |
O2 O |
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| TYR | B:540 | B:517 | 4.0 | 0.017 | E | -106.7 | 137.8 | NA | NA | NA | |||||||||||||
| 5vbi | 1 | P36871 | 99.82 | 0.0 |
X-RAY |
2018-06-20 | TYR | A:540 | A:517 | 6.0 | 0.026 | E | -107.4 | 132.3 | 6.0 | 0.026 | 0.0 |
SO4 GOL GOL GOL GOL HOH |
8.334 8.958 9.620 5.795 2.647 3.308 |
OH OH CE1 CD2 OH OH |
O3 O1 O1 O3 O1 O |
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| TYR | B:540 | B:517 | 3.0 | 0.013 | E | -106.0 | 132.5 | NA | NA | NA | |||||||||||||
| 1c47 | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1999-08-13 | TYR | A:516 | A:516 | 0.0 | 0.0 | E | -111.4 | 121.0 | 0.0 | 0.0 | 0.0 |
G16 HOH |
6.413 5.947 |
OH CE1 |
O2 O |
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| TYR | B:516 | B:516 | 1.0 | 0.004 | E | -104.1 | 121.7 | 1.0 | 0.004 | 0.0 |
HOH |
4.018 |
OH |
O |
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| 1c4g | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1999-08-27 | TYR | A:516 | A:516 | 1.0 | 0.004 | E | -114.7 | 106.7 | 1.0 | 0.004 | 0.0 |
VG1 HOH |
4.944 5.484 |
OH CZ |
O2 O |
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| TYR | B:516 | B:516 | 3.0 | 0.013 | E | -99.4 | 123.8 | 3.0 | 0.013 | 0.0 |
HOH |
3.802 |
OH |
O |
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| 1jdy | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1997-03-12 | TYR | A:516 | A:516 | 5.0 | 0.022 | E | -109.6 | 124.9 | 5.0 | 0.022 | 0.0 |
SO4 HOH |
5.424 5.435 |
OH OH |
O3 O |
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| TYR | B:516 | B:516 | 1.0 | 0.004 | E | -103.7 | 126.1 | NA | NA | NA | |||||||||||||
| 1lxt | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1997-02-12 | TYR | A:516 | A:516 | 4.0 | 0.017 | E | -100.1 | 121.9 | 4.0 | 0.017 | 0.0 |
HOH |
5.648 |
OH |
O |
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| TYR | B:516 | B:516 | 2.0 | 0.009 | E | -99.7 | 120.8 | NA | NA | NA | |||||||||||||
| 1vkl | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1997-01-11 | TYR | A:516 | A:516 | 4.0 | 0.017 | E | -102.1 | 127.1 | 4.0 | 0.017 | 0.0 |
HOH |
5.644 |
CD1 |
O |
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| TYR | B:516 | B:516 | 2.0 | 0.009 | E | -109.8 | 124.5 | NA | NA | NA | |||||||||||||
| 3pmg | 1 | P00949 | 96.97 | 0.0 |
X-RAY |
1995-12-07 | TYR | A:516 | A:516 | 3.0 | 0.013 | E | -110.3 | 124.8 | NA | NA | NA | ||||||
| TYR | B:516 | B:516 | 2.0 | 0.009 | E | -119.8 | 127.5 | 2.0 | 0.009 | 0.0 |
HOH |
1.780 |
HH |
H1 |
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| 6sno | 1 | P36871 | 93.05 | 0.0 |
X-RAY |
2020-04-08 | TYR | A:538 | A:535 | 4.0 | 0.017 | E | -102.8 | 140.8 | 4.0 | 0.017 | 0.0 |
G1P HOH |
3.978 2.276 |
OH OH |
O1P O |
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| 6snp | 1 | P36871 | 93.05 | 0.0 |
X-RAY |
2020-04-08 | TYR | A:538 | A:535 | 3.0 | 0.013 | E | -106.8 | 131.2 | 3.0 | 0.013 | 0.0 |
HOH |
5.751 |
OH |
O |
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| 6snq | 1 | P36871 | 93.05 | 0.0 |
X-RAY |
2020-04-08 | TYR | A:538 | A:535 | 3.0 | 0.013 | E | -109.1 | 136.4 | 3.0 | 0.013 | 0.0 |
G6P HOH |
4.326 2.235 |
OH OH |
O3P O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p36871-f1 | 1 | P36871 | 100.0 | 0.0 | TYR | A:517 | A:517 | 2.0 | 0.009 | E | -111.4 | 132.6 | |